miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 116401 0.66 0.545656
Target:  5'- cGCggacCCCCGcGCaGAgccccCGCGGCCCGcGGGg- -3'
miRNA:   3'- -CGa---GGGGC-CG-CU-----GCGCCGGGC-UCCag -5'
21479 3' -65 NC_004812.1 + 148924 0.66 0.536375
Target:  5'- gGCg-UCCGGCGGCGuCGGCgaCGAcgguGGUCg -3'
miRNA:   3'- -CGagGGGCCGCUGC-GCCGg-GCU----CCAG- -5'
21479 3' -65 NC_004812.1 + 125022 0.66 0.52623
Target:  5'- aGCUCcggaCCCGGgGACGCGcuccccucgcgccGCCCGGGcG-Cg -3'
miRNA:   3'- -CGAG----GGGCCgCUGCGC-------------CGGGCUC-CaG- -5'
21479 3' -65 NC_004812.1 + 103500 0.66 0.507976
Target:  5'- cGCUCCgcgaCGGCcGCGCGGagcaucuCCUGcAGGUCc -3'
miRNA:   3'- -CGAGGg---GCCGcUGCGCC-------GGGC-UCCAG- -5'
21479 3' -65 NC_004812.1 + 61208 0.66 0.536375
Target:  5'- aCUCgCCgGGCG-CGCGGgcuUCCG-GGUCg -3'
miRNA:   3'- cGAG-GGgCCGCuGCGCC---GGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 85613 0.66 0.527149
Target:  5'- gGCggCCCUGGCGGCcgacccGCGGgcCCCGcGGUg -3'
miRNA:   3'- -CGa-GGGGCCGCUG------CGCC--GGGCuCCAg -5'
21479 3' -65 NC_004812.1 + 53544 0.66 0.508882
Target:  5'- cCUCUCgGGCcucgcgcccGACGCaGucCCCGAGGUCg -3'
miRNA:   3'- cGAGGGgCCG---------CUGCGcC--GGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 59614 0.66 0.536375
Target:  5'- cGCUCgcgaaCCgGGgGugGCGGCCCcgcagccgcauGAGGg- -3'
miRNA:   3'- -CGAG-----GGgCCgCugCGCCGGG-----------CUCCag -5'
21479 3' -65 NC_004812.1 + 68423 0.66 0.527149
Target:  5'- cGC-CCCgCGGCcgagaggaggGACGC--CCCGGGGUCg -3'
miRNA:   3'- -CGaGGG-GCCG----------CUGCGccGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 44570 0.66 0.545656
Target:  5'- cCUCCCCGaaaaucuCGGCGUaGGCCCGcgacAGGUg -3'
miRNA:   3'- cGAGGGGCc------GCUGCG-CCGGGC----UCCAg -5'
21479 3' -65 NC_004812.1 + 138887 0.66 0.536375
Target:  5'- uCUCCgCGGCGcCGCaGaGCCUGcuGGUCg -3'
miRNA:   3'- cGAGGgGCCGCuGCG-C-CGGGCu-CCAG- -5'
21479 3' -65 NC_004812.1 + 35674 0.66 0.508882
Target:  5'- gGCUCUgUGGCGccgcguGCGCGGCgCCG-GGcCu -3'
miRNA:   3'- -CGAGGgGCCGC------UGCGCCG-GGCuCCaG- -5'
21479 3' -65 NC_004812.1 + 123121 0.66 0.545656
Target:  5'- uGC-CgUCGGCGGCgGCGGCgucggaggCGGGGUCg -3'
miRNA:   3'- -CGaGgGGCCGCUG-CGCCGg-------GCUCCAG- -5'
21479 3' -65 NC_004812.1 + 3418 0.66 0.515247
Target:  5'- --cCCCCGGCGGCccuccggcgccgccGCGcccCCCGuGGUCc -3'
miRNA:   3'- cgaGGGGCCGCUG--------------CGCc--GGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 126722 0.66 0.536375
Target:  5'- ---gCCCGGCccGGCcCGGCCCccGGGGUCc -3'
miRNA:   3'- cgagGGGCCG--CUGcGCCGGG--CUCCAG- -5'
21479 3' -65 NC_004812.1 + 123889 0.66 0.508882
Target:  5'- cCUCCCCcGaCGGgGCGGCcCCGAcGUCc -3'
miRNA:   3'- cGAGGGGcC-GCUgCGCCG-GGCUcCAG- -5'
21479 3' -65 NC_004812.1 + 29888 0.66 0.540081
Target:  5'- -gUCCCCcgaccaccucgugcaGGUGggccgcgauGCGCGGCCCGcGGGUg -3'
miRNA:   3'- cgAGGGG---------------CCGC---------UGCGCCGGGC-UCCAg -5'
21479 3' -65 NC_004812.1 + 1096 0.66 0.545656
Target:  5'- uCUCCuCCuGCccgGCGGCCCG-GGUCg -3'
miRNA:   3'- cGAGG-GGcCGcugCGCCGGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 125594 0.66 0.507976
Target:  5'- gGCUCCCgGGCGggcucccggccccGCGCGcGCCCcGGcccGUCc -3'
miRNA:   3'- -CGAGGGgCCGC-------------UGCGC-CGGGcUC---CAG- -5'
21479 3' -65 NC_004812.1 + 30484 0.66 0.563426
Target:  5'- uGCagCCCGcgugcucGCGGCGCGggggaggggacGCCCGGGGcCg -3'
miRNA:   3'- -CGagGGGC-------CGCUGCGC-----------CGGGCUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.