miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 85613 0.66 0.527149
Target:  5'- gGCggCCCUGGCGGCcgacccGCGGgcCCCGcGGUg -3'
miRNA:   3'- -CGa-GGGGCCGCUG------CGCC--GGGCuCCAg -5'
21479 3' -65 NC_004812.1 + 143680 0.66 0.527149
Target:  5'- --gCCCCGGCGAuCGuCGcGCUCGAGcGcUCg -3'
miRNA:   3'- cgaGGGGCCGCU-GC-GC-CGGGCUC-C-AG- -5'
21479 3' -65 NC_004812.1 + 121577 0.66 0.508882
Target:  5'- cCUgCUCGGCGGgGCGGgggCCGAGGg- -3'
miRNA:   3'- cGAgGGGCCGCUgCGCCg--GGCUCCag -5'
21479 3' -65 NC_004812.1 + 101003 0.66 0.527149
Target:  5'- gGCcgCCUCGcGCGGCGCGaggcagcggaucGCCuCGGGGUg -3'
miRNA:   3'- -CGa-GGGGC-CGCUGCGC------------CGG-GCUCCAg -5'
21479 3' -65 NC_004812.1 + 126120 0.66 0.508882
Target:  5'- cCUCCCCcGCGccgcgagcACGCGGgcugcaacCCCGAGGcUCu -3'
miRNA:   3'- cGAGGGGcCGC--------UGCGCC--------GGGCUCC-AG- -5'
21479 3' -65 NC_004812.1 + 113139 0.66 0.508882
Target:  5'- cGUUCCCCcgaaGGCucCGgGGCgCGAGgGUCg -3'
miRNA:   3'- -CGAGGGG----CCGcuGCgCCGgGCUC-CAG- -5'
21479 3' -65 NC_004812.1 + 30484 0.66 0.563426
Target:  5'- uGCagCCCGcgugcucGCGGCGCGggggaggggacGCCCGGGGcCg -3'
miRNA:   3'- -CGagGGGC-------CGCUGCGC-----------CGGGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 49700 0.66 0.527149
Target:  5'- -aUCCCgcaguaccuguCGGCGGCGUagacgccggacGGCCgaCGGGGUCg -3'
miRNA:   3'- cgAGGG-----------GCCGCUGCG-----------CCGG--GCUCCAG- -5'
21479 3' -65 NC_004812.1 + 122858 0.66 0.508882
Target:  5'- gGCgUCCUCGGCGuCGCG-CCgCGugcggGGGUCg -3'
miRNA:   3'- -CG-AGGGGCCGCuGCGCcGG-GC-----UCCAG- -5'
21479 3' -65 NC_004812.1 + 9202 0.66 0.517984
Target:  5'- aGCUCCCCgccGGUGGCGUcaccuGGCgauaCGAGGcCc -3'
miRNA:   3'- -CGAGGGG---CCGCUGCG-----CCGg---GCUCCaG- -5'
21479 3' -65 NC_004812.1 + 125732 0.66 0.527149
Target:  5'- cGCgcagCCCCGGCccCGCGGCCCc----- -3'
miRNA:   3'- -CGa---GGGGCCGcuGCGCCGGGcuccag -5'
21479 3' -65 NC_004812.1 + 53544 0.66 0.508882
Target:  5'- cCUCUCgGGCcucgcgcccGACGCaGucCCCGAGGUCg -3'
miRNA:   3'- cGAGGGgCCG---------CUGCGcC--GGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 68423 0.66 0.527149
Target:  5'- cGC-CCCgCGGCcgagaggaggGACGC--CCCGGGGUCg -3'
miRNA:   3'- -CGaGGG-GCCG----------CUGCGccGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 35674 0.66 0.508882
Target:  5'- gGCUCUgUGGCGccgcguGCGCGGCgCCG-GGcCu -3'
miRNA:   3'- -CGAGGgGCCGC------UGCGCCG-GGCuCCaG- -5'
21479 3' -65 NC_004812.1 + 7776 0.66 0.517984
Target:  5'- uGCgCgCCGuGCGGCGCGGCCgUGuAGGcCg -3'
miRNA:   3'- -CGaGgGGC-CGCUGCGCCGG-GC-UCCaG- -5'
21479 3' -65 NC_004812.1 + 125022 0.66 0.52623
Target:  5'- aGCUCcggaCCCGGgGACGCGcuccccucgcgccGCCCGGGcG-Cg -3'
miRNA:   3'- -CGAG----GGGCCgCUGCGC-------------CGGGCUC-CaG- -5'
21479 3' -65 NC_004812.1 + 103500 0.66 0.507976
Target:  5'- cGCUCCgcgaCGGCcGCGCGGagcaucuCCUGcAGGUCc -3'
miRNA:   3'- -CGAGGg---GCCGcUGCGCC-------GGGC-UCCAG- -5'
21479 3' -65 NC_004812.1 + 76777 0.66 0.517984
Target:  5'- gGCcCCCCGGUacuGGCccaGCaGCCCccaGAGGUCg -3'
miRNA:   3'- -CGaGGGGCCG---CUG---CGcCGGG---CUCCAG- -5'
21479 3' -65 NC_004812.1 + 123889 0.66 0.508882
Target:  5'- cCUCCCCcGaCGGgGCGGCcCCGAcGUCc -3'
miRNA:   3'- cGAGGGGcC-GCUgCGCCG-GGCUcCAG- -5'
21479 3' -65 NC_004812.1 + 3418 0.66 0.515247
Target:  5'- --cCCCCGGCGGCccuccggcgccgccGCGcccCCCGuGGUCc -3'
miRNA:   3'- cgaGGGGCCGCUG--------------CGCc--GGGCuCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.