miRNA display CGI


Results 1 - 20 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 53121 0.74 0.189284
Target:  5'- cGCUCaCCCGGCGGcCGaCGGUggCCGAGG-Cg -3'
miRNA:   3'- -CGAG-GGGCCGCU-GC-GCCG--GGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 55778 0.74 0.168304
Target:  5'- cCUCCCCGGCGuCGCGGCgcccgcccCCGAGa-- -3'
miRNA:   3'- cGAGGGGCCGCuGCGCCG--------GGCUCcag -5'
21479 3' -65 NC_004812.1 + 560 0.74 0.172326
Target:  5'- --gCCCCGGCGcGCGCGGCCgCGuGGa- -3'
miRNA:   3'- cgaGGGGCCGC-UGCGCCGG-GCuCCag -5'
21479 3' -65 NC_004812.1 + 57097 0.74 0.172326
Target:  5'- -gUCCgUCGGCGACGCGGCC-GcGGUCg -3'
miRNA:   3'- cgAGG-GGCCGCUGCGCCGGgCuCCAG- -5'
21479 3' -65 NC_004812.1 + 124232 0.74 0.172326
Target:  5'- gGCUCCgCGGCGGCgGgGGgCCG-GGUCg -3'
miRNA:   3'- -CGAGGgGCCGCUG-CgCCgGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 129622 0.74 0.172326
Target:  5'- cCUCCCCGGCGccgGCGgGGCCCucgucggaGAGGg- -3'
miRNA:   3'- cGAGGGGCCGC---UGCgCCGGG--------CUCCag -5'
21479 3' -65 NC_004812.1 + 18865 0.74 0.180629
Target:  5'- aGCgggUCCCGGgGGuCgGCGGCCCGcGGGUCg -3'
miRNA:   3'- -CGa--GGGGCCgCU-G-CGCCGGGC-UCCAG- -5'
21479 3' -65 NC_004812.1 + 98525 0.74 0.184912
Target:  5'- gGCggCCCCGGCGACGagccgucgcagGGCgCCGAGGg- -3'
miRNA:   3'- -CGa-GGGGCCGCUGCg----------CCG-GGCUCCag -5'
21479 3' -65 NC_004812.1 + 28532 0.74 0.189284
Target:  5'- --gCCCCGGCGGCagcgaGCGGCCCGAccUCg -3'
miRNA:   3'- cgaGGGGCCGCUG-----CGCCGGGCUccAG- -5'
21479 3' -65 NC_004812.1 + 1659 0.74 0.168304
Target:  5'- cGCUCCCCcguuggccgcGGCGcCGCGGCCCGcccgcggcGGGg- -3'
miRNA:   3'- -CGAGGGG----------CCGCuGCGCCGGGC--------UCCag -5'
21479 3' -65 NC_004812.1 + 128929 0.75 0.153044
Target:  5'- gGCUgggCCCCGGCGgcACGCGGCgCCagccgccgcgGGGGUCg -3'
miRNA:   3'- -CGA---GGGGCCGC--UGCGCCG-GG----------CUCCAG- -5'
21479 3' -65 NC_004812.1 + 154835 0.75 0.153044
Target:  5'- cGCUCCCguCGGCGcgggGCGCGGCUgCGAGGg- -3'
miRNA:   3'- -CGAGGG--GCCGC----UGCGCCGG-GCUCCag -5'
21479 3' -65 NC_004812.1 + 95528 0.84 0.033504
Target:  5'- --aCCCCGGCGGgGCGGCCCGGGG-Cg -3'
miRNA:   3'- cgaGGGGCCGCUgCGCCGGGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 94224 0.79 0.085219
Target:  5'- uGCUCCucgCCGGCGuCGcCGGCCUGGGGUUc -3'
miRNA:   3'- -CGAGG---GGCCGCuGC-GCCGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 94555 0.76 0.123212
Target:  5'- gGCggCCCUGGUGGCGgGGCUCGGGGcCu -3'
miRNA:   3'- -CGa-GGGGCCGCUGCgCCGGGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 151292 0.76 0.132503
Target:  5'- gGCgCCCCGGCGGacgacgcgcuCGCGGagcucgCCGAGGUCg -3'
miRNA:   3'- -CGaGGGGCCGCU----------GCGCCg-----GGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 130836 0.76 0.13574
Target:  5'- -gUCCgCCGG-GGCGCcGCCCGGGGUCg -3'
miRNA:   3'- cgAGG-GGCCgCUGCGcCGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 130644 0.75 0.145895
Target:  5'- gGCcgCCCggggaCGGCGGCGuCGGCCCGcGGUCc -3'
miRNA:   3'- -CGa-GGG-----GCCGCUGC-GCCGGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 51526 0.75 0.149431
Target:  5'- cGC-CCCCGGCG-CaGCGGCgCCGGGGg- -3'
miRNA:   3'- -CGaGGGGCCGCuG-CGCCG-GGCUCCag -5'
21479 3' -65 NC_004812.1 + 132985 0.75 0.149431
Target:  5'- cGCgcgCCCCGGCGgccGCGCGGacgaCCGGGG-Cg -3'
miRNA:   3'- -CGa--GGGGCCGC---UGCGCCg---GGCUCCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.