miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 72299 1.09 0.000521
Target:  5'- cGCUCCCCGGCGACGCGGCCCGAGGUCc -3'
miRNA:   3'- -CGAGGGGCCGCUGCGCCGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 126655 0.85 0.031033
Target:  5'- gGCUCCCCGGCGGCGCGaGCCCGGc--- -3'
miRNA:   3'- -CGAGGGGCCGCUGCGC-CGGGCUccag -5'
21479 3' -65 NC_004812.1 + 1146 0.85 0.031033
Target:  5'- gGCUCCCCGGCGGCGCGaGCCCGGc--- -3'
miRNA:   3'- -CGAGGGGCCGCUGCGC-CGGGCUccag -5'
21479 3' -65 NC_004812.1 + 95528 0.84 0.033504
Target:  5'- --aCCCCGGCGGgGCGGCCCGGGG-Cg -3'
miRNA:   3'- cgaGGGGCCGCUgCGCCGGGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 140393 0.83 0.044332
Target:  5'- gGCUCCgccuCCGGCG-CGCGGCCCG-GGUCc -3'
miRNA:   3'- -CGAGG----GGCCGCuGCGCCGGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 94224 0.79 0.085219
Target:  5'- uGCUCCucgCCGGCGuCGcCGGCCUGGGGUUc -3'
miRNA:   3'- -CGAGG---GGCCGCuGC-GCCGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 94555 0.76 0.123212
Target:  5'- gGCggCCCUGGUGGCGgGGCUCGGGGcCu -3'
miRNA:   3'- -CGa-GGGGCCGCUGCgCCGGGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 25784 0.76 0.132503
Target:  5'- gGCgCCCCGGCGGacgacgcgcuCGCGGagcucgCCGAGGUCg -3'
miRNA:   3'- -CGaGGGGCCGCU----------GCGCCg-----GGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 151292 0.76 0.132503
Target:  5'- gGCgCCCCGGCGGacgacgcgcuCGCGGagcucgCCGAGGUCg -3'
miRNA:   3'- -CGaGGGGCCGCU----------GCGCCg-----GGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 130836 0.76 0.13574
Target:  5'- -gUCCgCCGG-GGCGCcGCCCGGGGUCg -3'
miRNA:   3'- cgAGG-GGCCgCUGCGcCGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 145538 0.76 0.13574
Target:  5'- cGCggcgCCCCGGUucGCGCuGGuCCCGGGGUCg -3'
miRNA:   3'- -CGa---GGGGCCGc-UGCG-CC-GGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 5328 0.76 0.13574
Target:  5'- -gUCCgCCGG-GGCGCcGCCCGGGGUCg -3'
miRNA:   3'- cgAGG-GGCCgCUGCGcCGGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 91181 0.76 0.139051
Target:  5'- cCUCCCCGaGgGACGCgGGCUCGGGGg- -3'
miRNA:   3'- cGAGGGGC-CgCUGCG-CCGGGCUCCag -5'
21479 3' -65 NC_004812.1 + 105268 0.76 0.142435
Target:  5'- gGCUCCCCGGCGACuccgagggcggGCcuGGCCUGGGcGUa -3'
miRNA:   3'- -CGAGGGGCCGCUG-----------CG--CCGGGCUC-CAg -5'
21479 3' -65 NC_004812.1 + 130644 0.75 0.145895
Target:  5'- gGCcgCCCggggaCGGCGGCGuCGGCCCGcGGUCc -3'
miRNA:   3'- -CGa-GGG-----GCCGCUGC-GCCGGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 5135 0.75 0.145895
Target:  5'- gGCcgCCCggggaCGGCGGCGuCGGCCCGcGGUCc -3'
miRNA:   3'- -CGa-GGG-----GCCGCUGC-GCCGGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 16861 0.75 0.149431
Target:  5'- gGCgggCCCCGGgacCGGCGUGGCCCGucgcGGGUg -3'
miRNA:   3'- -CGa--GGGGCC---GCUGCGCCGGGC----UCCAg -5'
21479 3' -65 NC_004812.1 + 132985 0.75 0.149431
Target:  5'- cGCgcgCCCCGGCGgccGCGCGGacgaCCGGGG-Cg -3'
miRNA:   3'- -CGa--GGGGCCGC---UGCGCCg---GGCUCCaG- -5'
21479 3' -65 NC_004812.1 + 51526 0.75 0.149431
Target:  5'- cGC-CCCCGGCG-CaGCGGCgCCGGGGg- -3'
miRNA:   3'- -CGaGGGGCCGCuG-CGCCG-GGCUCCag -5'
21479 3' -65 NC_004812.1 + 7477 0.75 0.149431
Target:  5'- cGCgcgCCCCGGCGgccGCGCGGacgaCCGGGG-Cg -3'
miRNA:   3'- -CGa--GGGGCCGC---UGCGCCg---GGCUCCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.