miRNA display CGI


Results 1 - 20 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 10 0.69 0.382253
Target:  5'- cCUcCCCCGGCGGCGCGcGCgCGAa--- -3'
miRNA:   3'- cGA-GGGGCCGCUGCGC-CGgGCUccag -5'
21479 3' -65 NC_004812.1 + 85 0.66 0.507976
Target:  5'- gGCUCCCgGGCGggcucccggccccGCGCGcGCCCcGGcccGUCc -3'
miRNA:   3'- -CGAGGGgCCGC-------------UGCGC-CGGGcUC---CAG- -5'
21479 3' -65 NC_004812.1 + 560 0.74 0.172326
Target:  5'- --gCCCCGGCGcGCGCGGCCgCGuGGa- -3'
miRNA:   3'- cgaGGGGCCGC-UGCGCCGG-GCuCCag -5'
21479 3' -65 NC_004812.1 + 574 0.67 0.499849
Target:  5'- cGCccgUCCC-GCGGCGCGGCCCccggccccGGGcGUCc -3'
miRNA:   3'- -CGa--GGGGcCGCUGCGCCGGG--------CUC-CAG- -5'
21479 3' -65 NC_004812.1 + 612 0.66 0.508882
Target:  5'- cCUCCCCcGCGccgcgagcACGCGGgcugcaacCCCGAGGcUCu -3'
miRNA:   3'- cGAGGGGcCGC--------UGCGCC--------GGGCUCC-AG- -5'
21479 3' -65 NC_004812.1 + 676 0.72 0.227626
Target:  5'- cGCaCCCCGGCGcuccCGCGGCCCGGccUCc -3'
miRNA:   3'- -CGaGGGGCCGCu---GCGCCGGGCUccAG- -5'
21479 3' -65 NC_004812.1 + 691 0.69 0.357327
Target:  5'- cGCgUCCCCGGguccggagcuccguCGGCGuCGGCgCCGGcgcGGUCg -3'
miRNA:   3'- -CG-AGGGGCC--------------GCUGC-GCCG-GGCU---CCAG- -5'
21479 3' -65 NC_004812.1 + 764 0.66 0.554988
Target:  5'- cGCcUCCCGGCGcCGCGGgCCCcuucuGGGcCu -3'
miRNA:   3'- -CGaGGGGCCGCuGCGCC-GGGc----UCCaG- -5'
21479 3' -65 NC_004812.1 + 803 0.68 0.430436
Target:  5'- cGC-CCCCGcCGcCGCccGGCCgGGGGUCc -3'
miRNA:   3'- -CGaGGGGCcGCuGCG--CCGGgCUCCAG- -5'
21479 3' -65 NC_004812.1 + 1096 0.66 0.545656
Target:  5'- uCUCCuCCuGCccgGCGGCCCG-GGUCg -3'
miRNA:   3'- cGAGG-GGcCGcugCGCCGGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 1146 0.85 0.031033
Target:  5'- gGCUCCCCGGCGGCGCGaGCCCGGc--- -3'
miRNA:   3'- -CGAGGGGCCGCUGCGC-CGGGCUccag -5'
21479 3' -65 NC_004812.1 + 1238 0.7 0.323839
Target:  5'- cCUCCCCgcccgGGCGGCGCcgcggccGCCCGuuGGUCc -3'
miRNA:   3'- cGAGGGG-----CCGCUGCGc------CGGGCu-CCAG- -5'
21479 3' -65 NC_004812.1 + 1276 0.68 0.438807
Target:  5'- cGCcggCCgCgGGCGG-GCGGUCCGAGGg- -3'
miRNA:   3'- -CGa--GG-GgCCGCUgCGCCGGGCUCCag -5'
21479 3' -65 NC_004812.1 + 1407 0.7 0.337798
Target:  5'- cGCggCCCGGCcccGACgGCGGCCgCGGGGa- -3'
miRNA:   3'- -CGagGGGCCG---CUG-CGCCGG-GCUCCag -5'
21479 3' -65 NC_004812.1 + 1659 0.74 0.168304
Target:  5'- cGCUCCCCcguuggccgcGGCGcCGCGGCCCGcccgcggcGGGg- -3'
miRNA:   3'- -CGAGGGG----------CCGCuGCGCCGGGC--------UCCag -5'
21479 3' -65 NC_004812.1 + 1728 0.7 0.303716
Target:  5'- cGCccggCCCCGcGCGccucCGCGGCCCGAGc-- -3'
miRNA:   3'- -CGa---GGGGC-CGCu---GCGCCGGGCUCcag -5'
21479 3' -65 NC_004812.1 + 2162 0.68 0.405895
Target:  5'- cGCUcgCCCCGG-GACGCccGGCCCGAa--- -3'
miRNA:   3'- -CGA--GGGGCCgCUGCG--CCGGGCUccag -5'
21479 3' -65 NC_004812.1 + 2222 0.68 0.405092
Target:  5'- cGCggCCCgCGGCccagcgcacgcgcGGCGCGGCggCGGGGUCc -3'
miRNA:   3'- -CGa-GGG-GCCG-------------CUGCGCCGg-GCUCCAG- -5'
21479 3' -65 NC_004812.1 + 2271 0.7 0.34494
Target:  5'- gGCgUCCgCGcgcagcacgaGCGGCGCGGCgUCGGGGUCc -3'
miRNA:   3'- -CG-AGGgGC----------CGCUGCGCCG-GGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 2366 0.69 0.367009
Target:  5'- ---gCCCGGCGcGCGCGGCgUCGcGGUCc -3'
miRNA:   3'- cgagGGGCCGC-UGCGCCG-GGCuCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.