miRNA display CGI


Results 41 - 60 of 474 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21479 3' -65 NC_004812.1 + 131054 0.66 0.545656
Target:  5'- cGCgagCCCGGCGAgGCG-CCCGcGGa- -3'
miRNA:   3'- -CGag-GGGCCGCUgCGCcGGGCuCCag -5'
21479 3' -65 NC_004812.1 + 81882 0.66 0.545656
Target:  5'- cGCUCCagaCGGCGACcaacaCGGUgCUGGGGcUCg -3'
miRNA:   3'- -CGAGGg--GCCGCUGc----GCCG-GGCUCC-AG- -5'
21479 3' -65 NC_004812.1 + 70110 0.66 0.545656
Target:  5'- cGCUUCCCGGgGGCccgcaGCGGCUCc--GUCa -3'
miRNA:   3'- -CGAGGGGCCgCUG-----CGCCGGGcucCAG- -5'
21479 3' -65 NC_004812.1 + 28399 0.66 0.545656
Target:  5'- gGC-CUCCGGCcGCGUcuucgGGCCCGGcGUCu -3'
miRNA:   3'- -CGaGGGGCCGcUGCG-----CCGGGCUcCAG- -5'
21479 3' -65 NC_004812.1 + 10561 0.66 0.545656
Target:  5'- cGUUCUgcgugCCGGCGA-GCGGUgCCGGGGg- -3'
miRNA:   3'- -CGAGG-----GGCCGCUgCGCCG-GGCUCCag -5'
21479 3' -65 NC_004812.1 + 146846 0.66 0.545656
Target:  5'- cGCggCCgCCGGCGcgcCGCgGGCCUGGuggcGGUCc -3'
miRNA:   3'- -CGa-GG-GGCCGCu--GCG-CCGGGCU----CCAG- -5'
21479 3' -65 NC_004812.1 + 40420 0.66 0.544726
Target:  5'- uUUCCuCCGGCGgguuuugGCGCGGCCCc-GG-Ca -3'
miRNA:   3'- cGAGG-GGCCGC-------UGCGCCGGGcuCCaG- -5'
21479 3' -65 NC_004812.1 + 141187 0.66 0.544726
Target:  5'- aGCUCCCggaggcccggGGCGGCGCgcucgacGGcCCCGGccacGGUCg -3'
miRNA:   3'- -CGAGGGg---------CCGCUGCG-------CC-GGGCU----CCAG- -5'
21479 3' -65 NC_004812.1 + 72091 0.66 0.544726
Target:  5'- cGC-CCCCGaGCucguuugGGCGgGGgCUGGGGUCc -3'
miRNA:   3'- -CGaGGGGC-CG-------CUGCgCCgGGCUCCAG- -5'
21479 3' -65 NC_004812.1 + 29888 0.66 0.540081
Target:  5'- -gUCCCCcgaccaccucgugcaGGUGggccgcgauGCGCGGCCCGcGGGUg -3'
miRNA:   3'- cgAGGGG---------------CCGC---------UGCGCCGGGC-UCCAg -5'
21479 3' -65 NC_004812.1 + 69904 0.66 0.536375
Target:  5'- cGCUCCuCCGauaGCGGgggUGCGGCCgGGGcGUUc -3'
miRNA:   3'- -CGAGG-GGC---CGCU---GCGCCGGgCUC-CAG- -5'
21479 3' -65 NC_004812.1 + 8522 0.66 0.536375
Target:  5'- cGC-CCCCGGCGAUcCGGCCaaucGGcCu -3'
miRNA:   3'- -CGaGGGGCCGCUGcGCCGGgcu-CCaG- -5'
21479 3' -65 NC_004812.1 + 154455 0.66 0.536375
Target:  5'- gGCgUCCCggggcgagcgaGGCGGCGCGGCCgGGcucGaGUCg -3'
miRNA:   3'- -CG-AGGGg----------CCGCUGCGCCGGgCU---C-CAG- -5'
21479 3' -65 NC_004812.1 + 61208 0.66 0.536375
Target:  5'- aCUCgCCgGGCG-CGCGGgcuUCCG-GGUCg -3'
miRNA:   3'- cGAG-GGgCCGCuGCGCC---GGGCuCCAG- -5'
21479 3' -65 NC_004812.1 + 123554 0.66 0.536375
Target:  5'- gGCgUCCCggggcgagcgaGGCGGCGCGGCCgGGcucGaGUCg -3'
miRNA:   3'- -CG-AGGGg----------CCGCUGCGCCGGgCU---C-CAG- -5'
21479 3' -65 NC_004812.1 + 59614 0.66 0.536375
Target:  5'- cGCUCgcgaaCCgGGgGugGCGGCCCcgcagccgcauGAGGg- -3'
miRNA:   3'- -CGAG-----GGgCCgCugCGCCGGG-----------CUCCag -5'
21479 3' -65 NC_004812.1 + 71209 0.66 0.536375
Target:  5'- cGCgCCaggCGGCGAgcggGCGGCCgCGAGGg- -3'
miRNA:   3'- -CGaGGg--GCCGCUg---CGCCGG-GCUCCag -5'
21479 3' -65 NC_004812.1 + 138887 0.66 0.536375
Target:  5'- uCUCCgCGGCGcCGCaGaGCCUGcuGGUCg -3'
miRNA:   3'- cGAGGgGCCGCuGCG-C-CGGGCu-CCAG- -5'
21479 3' -65 NC_004812.1 + 148924 0.66 0.536375
Target:  5'- gGCg-UCCGGCGGCGuCGGCgaCGAcgguGGUCg -3'
miRNA:   3'- -CGagGGGCCGCUGC-GCCGg-GCU----CCAG- -5'
21479 3' -65 NC_004812.1 + 126722 0.66 0.536375
Target:  5'- ---gCCCGGCccGGCcCGGCCCccGGGGUCc -3'
miRNA:   3'- cgagGGGCCG--CUGcGCCGGG--CUCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.