miRNA display CGI


Results 41 - 60 of 273 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21483 5' -56.7 NC_004812.1 + 62314 0.66 0.856406
Target:  5'- cGAUGAGuuUCGCuucGUCGCGCcccGCGCGCu- -3'
miRNA:   3'- -CUGCUU--GGCGu--CAGCGCG---UGUGCGuu -5'
21483 5' -56.7 NC_004812.1 + 27467 0.66 0.856406
Target:  5'- cGCGGGCgGCGccgCGCGCccgccgGCGCGCAAg -3'
miRNA:   3'- cUGCUUGgCGUca-GCGCG------UGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 152975 0.66 0.856406
Target:  5'- cGCGGGCgGCGccgCGCGCccgccgGCGCGCAAg -3'
miRNA:   3'- cUGCUUGgCGUca-GCGCG------UGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 47339 0.66 0.856406
Target:  5'- aGGCcu-CUGCGGUCGCGCcC-CGCAAc -3'
miRNA:   3'- -CUGcuuGGCGUCAGCGCGuGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 156330 0.66 0.848515
Target:  5'- -cCGGACgGCGGcggaGCGCGCGCGgGAg -3'
miRNA:   3'- cuGCUUGgCGUCag--CGCGUGUGCgUU- -5'
21483 5' -56.7 NC_004812.1 + 38770 0.66 0.848515
Target:  5'- cGAUGGucACCa-GGUcCGCGCGCACGCGc -3'
miRNA:   3'- -CUGCU--UGGcgUCA-GCGCGUGUGCGUu -5'
21483 5' -56.7 NC_004812.1 + 125429 0.66 0.848515
Target:  5'- -cCGGACgGCGGcggaGCGCGCGCGgGAg -3'
miRNA:   3'- cuGCUUGgCGUCag--CGCGUGUGCgUU- -5'
21483 5' -56.7 NC_004812.1 + 95753 0.66 0.848515
Target:  5'- cGCGucGCgGCGGcCGCGCACAC-CGAg -3'
miRNA:   3'- cUGCu-UGgCGUCaGCGCGUGUGcGUU- -5'
21483 5' -56.7 NC_004812.1 + 71952 0.66 0.848515
Target:  5'- gGGCGGcccuGCCGCGa-CGCGCGC-CGCGGg -3'
miRNA:   3'- -CUGCU----UGGCGUcaGCGCGUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 41136 0.66 0.848515
Target:  5'- cGGCGcGGCCGCA--CGCGCGCG-GCGAg -3'
miRNA:   3'- -CUGC-UUGGCGUcaGCGCGUGUgCGUU- -5'
21483 5' -56.7 NC_004812.1 + 71899 0.66 0.848515
Target:  5'- cGGCGGGCCggGCGG-CGCGgCGC-CGCGGg -3'
miRNA:   3'- -CUGCUUGG--CGUCaGCGC-GUGuGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 74715 0.66 0.848515
Target:  5'- cACGAgccccagcACCGUguuGGUCGCcgucuggaGCGCGCGCAGc -3'
miRNA:   3'- cUGCU--------UGGCG---UCAGCG--------CGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 98433 0.66 0.848515
Target:  5'- cGGCG-GCCGCGGggCG-GCAgGCGCGGg -3'
miRNA:   3'- -CUGCuUGGCGUCa-GCgCGUgUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 23792 0.66 0.848515
Target:  5'- cGACGcGugCGCGGcuccaugCGCGC-CGCGCGGg -3'
miRNA:   3'- -CUGC-UugGCGUCa------GCGCGuGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 37353 0.66 0.848515
Target:  5'- cACGuuCUGCAgcGUgGCGUACACGCGGu -3'
miRNA:   3'- cUGCuuGGCGU--CAgCGCGUGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 31802 0.66 0.847715
Target:  5'- cGACGAACCGCcccuugguggcguAGUgGUGC-CGCGgGAc -3'
miRNA:   3'- -CUGCUUGGCG-------------UCAgCGCGuGUGCgUU- -5'
21483 5' -56.7 NC_004812.1 + 84835 0.66 0.846109
Target:  5'- uGACGGACCucugccagccggacGCAGaUCGCGCcgGCACGg-- -3'
miRNA:   3'- -CUGCUUGG--------------CGUC-AGCGCG--UGUGCguu -5'
21483 5' -56.7 NC_004812.1 + 10801 0.67 0.840427
Target:  5'- cGGCgGGGCCGCAcGUcucCGCGaggACACGCAGg -3'
miRNA:   3'- -CUG-CUUGGCGU-CA---GCGCg--UGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 151918 0.67 0.840427
Target:  5'- cGGCGGGCCGgGGgcgcuccccUCgGCGCcgGCGCGCGAc -3'
miRNA:   3'- -CUGCUUGGCgUC---------AG-CGCG--UGUGCGUU- -5'
21483 5' -56.7 NC_004812.1 + 50280 0.67 0.840427
Target:  5'- cGCGAACCgGCGGgucUGCGCGgGgGCGAg -3'
miRNA:   3'- cUGCUUGG-CGUCa--GCGCGUgUgCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.