miRNA display CGI


Results 21 - 40 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 85694 0.66 0.658867
Target:  5'- uCGCuGGCGGCcagaCCUGCgggggcggcCCACUGGCCGc -3'
miRNA:   3'- -GUG-CCGUCGc---GGACGa--------GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 97130 0.66 0.626196
Target:  5'- cCGCGGCGgcGCGCCU-CUCCGCgGucgcgugguugaucGCCGg -3'
miRNA:   3'- -GUGCCGU--CGCGGAcGAGGUGgC--------------UGGU- -5'
21488 5' -61.6 NC_004812.1 + 51188 0.66 0.639076
Target:  5'- gGCgGGCgcgGGCGCCggGCcCCGCCGAgCGc -3'
miRNA:   3'- gUG-CCG---UCGCGGa-CGaGGUGGCUgGU- -5'
21488 5' -61.6 NC_004812.1 + 151097 0.66 0.678577
Target:  5'- gACGGCGGggaCGCCUuccccGCggCCGCCGccGCCGc -3'
miRNA:   3'- gUGCCGUC---GCGGA-----CGa-GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 136517 0.66 0.668736
Target:  5'- gCGCGGC-GCGCUccuccgagGCgUCCGCUGGCUg -3'
miRNA:   3'- -GUGCCGuCGCGGa-------CG-AGGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 15124 0.66 0.625206
Target:  5'- gUACGGCGGCGCCcccgacgGCgacgucgcagccgUCGCCGAgCGa -3'
miRNA:   3'- -GUGCCGUCGCGGa------CGa------------GGUGGCUgGU- -5'
21488 5' -61.6 NC_004812.1 + 717 0.66 0.678577
Target:  5'- gGCGuCGGCGCCgGCgcggUCGCCGGCgGg -3'
miRNA:   3'- gUGCcGUCGCGGaCGa---GGUGGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 108200 0.66 0.658867
Target:  5'- cUACGaGCGGaGCCUggcGCUCUACCGcGCCu -3'
miRNA:   3'- -GUGC-CGUCgCGGA---CGAGGUGGC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 95703 0.66 0.658867
Target:  5'- -uUGGguGcCGCCUGCcgcgccccaCCGCCGACUu -3'
miRNA:   3'- guGCCguC-GCGGACGa--------GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 33021 0.66 0.668736
Target:  5'- --gGGCGcGCGUgUGCUCgGCCG-CCGc -3'
miRNA:   3'- gugCCGU-CGCGgACGAGgUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 99800 0.66 0.629169
Target:  5'- uGCGGC-GCGCCgccaGCUgCGCCGcgcgaacggcGCCGg -3'
miRNA:   3'- gUGCCGuCGCGGa---CGAgGUGGC----------UGGU- -5'
21488 5' -61.6 NC_004812.1 + 138330 0.66 0.67956
Target:  5'- gCGCGGaggaGGC-CCUGCggaucgcgcacgacgCCugCGACCGg -3'
miRNA:   3'- -GUGCCg---UCGcGGACGa--------------GGugGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 141592 0.66 0.668736
Target:  5'- -cCGGCcccugGGCGCCUGCcCCGuCCGcaACCu -3'
miRNA:   3'- guGCCG-----UCGCGGACGaGGU-GGC--UGGu -5'
21488 5' -61.6 NC_004812.1 + 108772 0.66 0.658867
Target:  5'- gCGCGGgGGCGCCUaCgaCCugCaGGCCAu -3'
miRNA:   3'- -GUGCCgUCGCGGAcGa-GGugG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 106512 0.66 0.648977
Target:  5'- cCGCGGCgcggGGCGCCgGCggCCGCgGcGCCu -3'
miRNA:   3'- -GUGCCG----UCGCGGaCGa-GGUGgC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 115150 0.66 0.648977
Target:  5'- gAgGGCGGC-CCUGCggCACCGAUa- -3'
miRNA:   3'- gUgCCGUCGcGGACGagGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 115486 0.66 0.648977
Target:  5'- uGCGGCcGCGCCggGCggCgGCCcGGCCu -3'
miRNA:   3'- gUGCCGuCGCGGa-CGa-GgUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 144970 0.66 0.668736
Target:  5'- gCGCGGCgAGCGUCUGgaCggagCGCCuGGCCGu -3'
miRNA:   3'- -GUGCCG-UCGCGGACgaG----GUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 91706 0.66 0.678577
Target:  5'- aCACGGCGGCcUCUGUgcaAUCGACCc -3'
miRNA:   3'- -GUGCCGUCGcGGACGaggUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 34626 0.66 0.658867
Target:  5'- gACGGCGGgGCCgucgaacgUGCacacccgggCCACCGgcGCCAg -3'
miRNA:   3'- gUGCCGUCgCGG--------ACGa--------GGUGGC--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.