miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 54650 0.66 0.648977
Target:  5'- cCACGGgGGuCGCCgccgcgggGC-CCAgCGGCCGg -3'
miRNA:   3'- -GUGCCgUC-GCGGa-------CGaGGUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 73682 0.66 0.626196
Target:  5'- --aGGUcgaGGCGCCagaaguuguagaugUGCUCCgggguGCCGGCCAc -3'
miRNA:   3'- gugCCG---UCGCGG--------------ACGAGG-----UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 34626 0.66 0.658867
Target:  5'- gACGGCGGgGCCgucgaacgUGCacacccgggCCACCGgcGCCAg -3'
miRNA:   3'- gUGCCGUCgCGG--------ACGa--------GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 96826 0.66 0.648977
Target:  5'- gAgGGUgagGGCGCC-GCccCCACCGGCCc -3'
miRNA:   3'- gUgCCG---UCGCGGaCGa-GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 19582 0.66 0.639076
Target:  5'- aCugGGguGUGuCCUGgaUCGCCG-CCAg -3'
miRNA:   3'- -GugCCguCGC-GGACgaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 77269 0.66 0.639076
Target:  5'- -uCGGCcaGGC-CCgaGCUCCGCCGcACCGu -3'
miRNA:   3'- guGCCG--UCGcGGa-CGAGGUGGC-UGGU- -5'
21488 5' -61.6 NC_004812.1 + 115486 0.66 0.648977
Target:  5'- uGCGGCcGCGCCggGCggCgGCCcGGCCu -3'
miRNA:   3'- gUGCCGuCGCGGa-CGa-GgUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 41540 0.66 0.629169
Target:  5'- cUACGugcGCAGCGa--GCUCCGCCGGCgCGg -3'
miRNA:   3'- -GUGC---CGUCGCggaCGAGGUGGCUG-GU- -5'
21488 5' -61.6 NC_004812.1 + 121520 0.66 0.639076
Target:  5'- cCGCGGgGGCGCCcucgGCgUCCACgUGGCgGg -3'
miRNA:   3'- -GUGCCgUCGCGGa---CG-AGGUG-GCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 115150 0.66 0.648977
Target:  5'- gAgGGCGGC-CCUGCggCACCGAUa- -3'
miRNA:   3'- gUgCCGUCGcGGACGagGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 106512 0.66 0.648977
Target:  5'- cCGCGGCgcggGGCGCCgGCggCCGCgGcGCCu -3'
miRNA:   3'- -GUGCCG----UCGCGGaCGa-GGUGgC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 37116 0.66 0.648977
Target:  5'- gGCGGUguuGGCGCCcGCgUCgGCCG-CCGc -3'
miRNA:   3'- gUGCCG---UCGCGGaCG-AGgUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 97130 0.66 0.626196
Target:  5'- cCGCGGCGgcGCGCCU-CUCCGCgGucgcgugguugaucGCCGg -3'
miRNA:   3'- -GUGCCGU--CGCGGAcGAGGUGgC--------------UGGU- -5'
21488 5' -61.6 NC_004812.1 + 31833 0.66 0.638085
Target:  5'- cCGCGGgAccagcgagaccgaGCGCCgGCUCCACa-GCCAg -3'
miRNA:   3'- -GUGCCgU-------------CGCGGaCGAGGUGgcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 138330 0.66 0.67956
Target:  5'- gCGCGGaggaGGC-CCUGCggaucgcgcacgacgCCugCGACCGg -3'
miRNA:   3'- -GUGCCg---UCGcGGACGa--------------GGugGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 15124 0.66 0.625206
Target:  5'- gUACGGCGGCGCCcccgacgGCgacgucgcagccgUCGCCGAgCGa -3'
miRNA:   3'- -GUGCCGUCGCGGa------CGa------------GGUGGCUgGU- -5'
21488 5' -61.6 NC_004812.1 + 29313 0.66 0.636104
Target:  5'- -cCGGCAGCGCgCcaccguuuuccuggUGCcCCGCCG-CCAc -3'
miRNA:   3'- guGCCGUCGCG-G--------------ACGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 108200 0.66 0.658867
Target:  5'- cUACGaGCGGaGCCUggcGCUCUACCGcGCCu -3'
miRNA:   3'- -GUGC-CGUCgCGGA---CGAGGUGGC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 109704 0.66 0.648977
Target:  5'- cCGCGGCGGCgGCC-GC-CgCGCCcGACCc -3'
miRNA:   3'- -GUGCCGUCG-CGGaCGaG-GUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 99800 0.66 0.629169
Target:  5'- uGCGGC-GCGCCgccaGCUgCGCCGcgcgaacggcGCCGg -3'
miRNA:   3'- gUGCCGuCGCGGa---CGAgGUGGC----------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.