miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 15998 0.72 0.30666
Target:  5'- cCGCGGCcccGCGCCagcagcaGCUCCGCCaGGCCu -3'
miRNA:   3'- -GUGCCGu--CGCGGa------CGAGGUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 152640 0.74 0.23287
Target:  5'- cUACGGCGGCGaCCUGg-CCGCCGugCc -3'
miRNA:   3'- -GUGCCGUCGC-GGACgaGGUGGCugGu -5'
21488 5' -61.6 NC_004812.1 + 77174 0.74 0.23287
Target:  5'- cCGCGGCGGCGCCguccCCGCCG-CCGg -3'
miRNA:   3'- -GUGCCGUCGCGGacgaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 100643 0.74 0.255655
Target:  5'- gCACGGCGGCGCgaGC-CgCGCCgGGCCGg -3'
miRNA:   3'- -GUGCCGUCGCGgaCGaG-GUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 152974 0.74 0.26163
Target:  5'- aCGCgGGCGGCGCCgcgcGC-CCGCCGGCg- -3'
miRNA:   3'- -GUG-CCGUCGCGGa---CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 117391 0.73 0.267105
Target:  5'- gGCGGCGGCGCCggcccgcUGCUgcgcUCGCUGGCCu -3'
miRNA:   3'- gUGCCGUCGCGG-------ACGA----GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 150696 0.73 0.267719
Target:  5'- --gGGCGGCGUCgcggcgGCUCCGCCcGCCGg -3'
miRNA:   3'- gugCCGUCGCGGa-----CGAGGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 152806 0.73 0.293217
Target:  5'- -cCGGCGGCGCCgagGCcgccgucgCCGCCGugCGc -3'
miRNA:   3'- guGCCGUCGCGGa--CGa-------GGUGGCugGU- -5'
21488 5' -61.6 NC_004812.1 + 131525 0.73 0.297201
Target:  5'- gCGCGGCGGCGCCgccccgucgaggaGC-CCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa------------CGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 152882 0.75 0.222131
Target:  5'- gCGCGGCccGCGCCaggugcGCUCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGu-CGCGGa-----CGAGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 155107 0.75 0.211817
Target:  5'- gCGCGGCGGCgcgggccgGCCggcGCUCCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCG--------CGGa--CGAGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 19699 0.75 0.201918
Target:  5'- gCGCGGCGGCGCgCgGCgCCGgCGACCGg -3'
miRNA:   3'- -GUGCCGUCGCG-GaCGaGGUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 152020 0.78 0.130993
Target:  5'- gCGCGGCAguacgcccucaucacGCGCCUGCUCUucgcgcCCGACCGc -3'
miRNA:   3'- -GUGCCGU---------------CGCGGACGAGGu-----GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 149020 0.77 0.158268
Target:  5'- gCGCGGCGGCGCCgGCUUUauGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGG--UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 26109 0.77 0.162218
Target:  5'- gGCGGCAGCGCgUccgggaucGCgaCCGCCGACCAc -3'
miRNA:   3'- gUGCCGUCGCGgA--------CGa-GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 48344 0.77 0.166256
Target:  5'- gGCGGCGGaCGCCgccgaggGCUCCGCCGcggacGCCGc -3'
miRNA:   3'- gUGCCGUC-GCGGa------CGAGGUGGC-----UGGU- -5'
21488 5' -61.6 NC_004812.1 + 1249 0.76 0.174603
Target:  5'- --gGGCGGCGCCgcgGCcgcccguuggUCCGCCGGCCGc -3'
miRNA:   3'- gugCCGUCGCGGa--CG----------AGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 18557 0.76 0.183322
Target:  5'- gCGCGGCGcGgGCCcGCUCCGCCGccGCCGc -3'
miRNA:   3'- -GUGCCGU-CgCGGaCGAGGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 72486 0.76 0.187824
Target:  5'- gGCGGCGGCGCCUcggggucgggggGCgcgCCGCCG-CCGg -3'
miRNA:   3'- gUGCCGUCGCGGA------------CGa--GGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 107415 0.75 0.201918
Target:  5'- gGCGGguGCgGCCagGC-CCACCGGCCGc -3'
miRNA:   3'- gUGCCguCG-CGGa-CGaGGUGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.