miRNA display CGI


Results 1 - 20 of 420 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 67635 1.07 0.001181
Target:  5'- gCACGGCAGCGCCUGCUCCACCGACCAc -3'
miRNA:   3'- -GUGCCGUCGCGGACGAGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 96040 0.86 0.037414
Target:  5'- aCGCGGguGCGCaUGCUCCGCCGGCCc -3'
miRNA:   3'- -GUGCCguCGCGgACGAGGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 99704 0.82 0.075869
Target:  5'- uGCGGCGGCGCCUGCgCCcaggGCUGGCCGc -3'
miRNA:   3'- gUGCCGUCGCGGACGaGG----UGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 90495 0.78 0.129685
Target:  5'- gGCGGCGGCGCCUGCgacccCCGCCuGCUc -3'
miRNA:   3'- gUGCCGUCGCGGACGa----GGUGGcUGGu -5'
21488 5' -61.6 NC_004812.1 + 26512 0.78 0.130993
Target:  5'- gCGCGGCAguacgcccucaucacGCGCCUGCUCUucgcgcCCGACCGc -3'
miRNA:   3'- -GUGCCGU---------------CGCGGACGAGGu-----GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 152020 0.78 0.130993
Target:  5'- gCGCGGCAguacgcccucaucacGCGCCUGCUCUucgcgcCCGACCGc -3'
miRNA:   3'- -GUGCCGU---------------CGCGGACGAGGu-----GGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 88625 0.77 0.150629
Target:  5'- gCAUGGCGGCGCCccagUGCgCCGCCGGCa- -3'
miRNA:   3'- -GUGCCGUCGCGG----ACGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 149020 0.77 0.158268
Target:  5'- gCGCGGCGGCGCCgGCUUUauGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGG--UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 23512 0.77 0.158268
Target:  5'- gCGCGGCGGCGCCgGCUUUauGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGG--UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 26109 0.77 0.162218
Target:  5'- gGCGGCAGCGCgUccgggaucGCgaCCGCCGACCAc -3'
miRNA:   3'- gUGCCGUCGCGgA--------CGa-GGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 103265 0.77 0.166256
Target:  5'- aCGCGGCGGCGaCCccgaagccCUCCGCCGACCc -3'
miRNA:   3'- -GUGCCGUCGC-GGac------GAGGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 48344 0.77 0.166256
Target:  5'- gGCGGCGGaCGCCgccgaggGCUCCGCCGcggacGCCGc -3'
miRNA:   3'- gUGCCGUC-GCGGa------CGAGGUGGC-----UGGU- -5'
21488 5' -61.6 NC_004812.1 + 32150 0.76 0.174603
Target:  5'- --gGGCGGCGCCgcgGCcgcccguuggUCCGCCGGCCGc -3'
miRNA:   3'- gugCCGUCGCGGa--CG----------AGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 1249 0.76 0.174603
Target:  5'- --gGGCGGCGCCgcgGCcgcccguuggUCCGCCGGCCGc -3'
miRNA:   3'- gugCCGUCGCGGa--CG----------AGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 43749 0.76 0.178915
Target:  5'- uCGCGGCGGCGCCgGUUUCGuCUGGCCu -3'
miRNA:   3'- -GUGCCGUCGCGGaCGAGGU-GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 18557 0.76 0.183322
Target:  5'- gCGCGGCGcGgGCCcGCUCCGCCGccGCCGc -3'
miRNA:   3'- -GUGCCGU-CgCGGaCGAGGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 72486 0.76 0.187824
Target:  5'- gGCGGCGGCGCCUcggggucgggggGCgcgCCGCCG-CCGg -3'
miRNA:   3'- gUGCCGUCGCGGA------------CGa--GGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 96512 0.76 0.191959
Target:  5'- cCACGGCcaucGGCGCCUaccuggcGCgggCCGCCGGCCu -3'
miRNA:   3'- -GUGCCG----UCGCGGA-------CGa--GGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 43867 0.76 0.192423
Target:  5'- gCGCGGCGGCGCCgccgcgcgGUUCgCGCCcGGCCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa-------CGAG-GUGG-CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 19699 0.75 0.201918
Target:  5'- gCGCGGCGGCGCgCgGCgCCGgCGACCGg -3'
miRNA:   3'- -GUGCCGUCGCG-GaCGaGGUgGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.