miRNA display CGI


Results 1 - 20 of 420 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 141 0.67 0.589631
Target:  5'- gCGCGcGUGGCGCC-GCgCCGCCGcGCCc -3'
miRNA:   3'- -GUGC-CGUCGCGGaCGaGGUGGC-UGGu -5'
21488 5' -61.6 NC_004812.1 + 479 0.68 0.557341
Target:  5'- uGCGuGCGcacGCGCCUGCUgcccgaacucacggCCGCCGcgGCCGg -3'
miRNA:   3'- gUGC-CGU---CGCGGACGA--------------GGUGGC--UGGU- -5'
21488 5' -61.6 NC_004812.1 + 717 0.66 0.678577
Target:  5'- gGCGuCGGCGCCgGCgcggUCGCCGGCgGg -3'
miRNA:   3'- gUGCcGUCGCGGaCGa---GGUGGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 1217 0.68 0.52177
Target:  5'- gGgGGCGGCGCCgcggggGCUCCuccCCG-CCc -3'
miRNA:   3'- gUgCCGUCGCGGa-----CGAGGu--GGCuGGu -5'
21488 5' -61.6 NC_004812.1 + 1249 0.76 0.174603
Target:  5'- --gGGCGGCGCCgcgGCcgcccguuggUCCGCCGGCCGc -3'
miRNA:   3'- gugCCGUCGCGGa--CG----------AGGUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 1790 0.66 0.678577
Target:  5'- gACGGgAGCGCgUGCaucgggCC-CCGGCUg -3'
miRNA:   3'- gUGCCgUCGCGgACGa-----GGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 2162 0.66 0.678577
Target:  5'- uCGCGGCGGCgGCCacCUCCACggCGGCg- -3'
miRNA:   3'- -GUGCCGUCG-CGGacGAGGUG--GCUGgu -5'
21488 5' -61.6 NC_004812.1 + 2608 0.67 0.579803
Target:  5'- gCGCGGUAGCGCaCguugGCgCCGCgGcCCAg -3'
miRNA:   3'- -GUGCCGUCGCG-Ga---CGaGGUGgCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 2823 0.67 0.579803
Target:  5'- gACGGCGG-GCCcG-UCgGCCGGCCAc -3'
miRNA:   3'- gUGCCGUCgCGGaCgAGgUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 3104 0.67 0.599488
Target:  5'- gGCGGgggaGGCGCCgccgaGCUCCucGCCGGgCAg -3'
miRNA:   3'- gUGCCg---UCGCGGa----CGAGG--UGGCUgGU- -5'
21488 5' -61.6 NC_004812.1 + 3507 0.68 0.512304
Target:  5'- cCGgGGCGGCGCCcagacaGC-CCGCCcACCAg -3'
miRNA:   3'- -GUgCCGUCGCGGa-----CGaGGUGGcUGGU- -5'
21488 5' -61.6 NC_004812.1 + 3584 0.67 0.599488
Target:  5'- gGCGGCGGCGgCggGCgggCgCGCCGGCgAg -3'
miRNA:   3'- gUGCCGUCGCgGa-CGa--G-GUGGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 3640 0.67 0.599488
Target:  5'- gGCGcGCGGCGCCgcccGCgUCUGCguCGGCCAg -3'
miRNA:   3'- gUGC-CGUCGCGGa---CG-AGGUG--GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 3713 0.7 0.421349
Target:  5'- gGCGGCGGCGCCgGCggagCgCACCuggcgcgGGCCGc -3'
miRNA:   3'- gUGCCGUCGCGGaCGa---G-GUGG-------CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 3763 0.68 0.540899
Target:  5'- gCGCGGCGGCGCCgGCgacgagGCUGACg- -3'
miRNA:   3'- -GUGCCGUCGCGGaCGagg---UGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 3796 0.7 0.412876
Target:  5'- gCACGGCGGCgacggcgGCCUcgGCgCCGCCGGCg- -3'
miRNA:   3'- -GUGCCGUCG-------CGGA--CGaGGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 3876 0.69 0.448266
Target:  5'- cCGCGGCccgcaAGCGCCcgGcCUCCGCCuccgaGGCCGc -3'
miRNA:   3'- -GUGCCG-----UCGCGGa-C-GAGGUGG-----CUGGU- -5'
21488 5' -61.6 NC_004812.1 + 3908 0.68 0.540899
Target:  5'- gCGCGGCGGCGCggcgGCggggCCGCgCGGCg- -3'
miRNA:   3'- -GUGCCGUCGCGga--CGa---GGUG-GCUGgu -5'
21488 5' -61.6 NC_004812.1 + 3989 0.67 0.589631
Target:  5'- -cCGGCcgGGCaCCUGCUCuCGCCG-CCGc -3'
miRNA:   3'- guGCCG--UCGcGGACGAG-GUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 4063 0.69 0.466128
Target:  5'- cCGCaGGCcGCuCCUcCUCCGCCGGCCGc -3'
miRNA:   3'- -GUG-CCGuCGcGGAcGAGGUGGCUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.