miRNA display CGI


Results 21 - 40 of 420 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21488 5' -61.6 NC_004812.1 + 4252 0.67 0.619264
Target:  5'- gGCGGCGGCGCCcGC-CgCGgCGGCg- -3'
miRNA:   3'- gUGCCGUCGCGGaCGaG-GUgGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 4372 0.66 0.662817
Target:  5'- gGCGGCGGCgugcgccaggccccaGCCgaaGCggCCGgCGGCCAu -3'
miRNA:   3'- gUGCCGUCG---------------CGGa--CGa-GGUgGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 4757 0.67 0.619264
Target:  5'- gGCGGCucGGCGCCgggccacgGCUcgCCGCUGGCg- -3'
miRNA:   3'- gUGCCG--UCGCGGa-------CGA--GGUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 4899 0.71 0.388911
Target:  5'- cCACGGCGgcgcgcgcGCGCCgccGCUCgCugCGGCCc -3'
miRNA:   3'- -GUGCCGU--------CGCGGa--CGAG-GugGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 5146 0.7 0.422202
Target:  5'- gACGGCGGCGUCgGC-CCGCgGuCCGg -3'
miRNA:   3'- gUGCCGUCGCGGaCGaGGUGgCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 5389 0.68 0.531303
Target:  5'- uCGCGGCgcGGgGCCggggGCgUCGCCGGCCc -3'
miRNA:   3'- -GUGCCG--UCgCGGa---CGaGGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 5502 0.67 0.579803
Target:  5'- gGCGGCGGCgGCCgcggggaagGCguccCCGCCGuCCu -3'
miRNA:   3'- gUGCCGUCG-CGGa--------CGa---GGUGGCuGGu -5'
21488 5' -61.6 NC_004812.1 + 5699 0.67 0.589631
Target:  5'- gCGCGGCGGUcuccgGCgaGCg-CGCCGACCu -3'
miRNA:   3'- -GUGCCGUCG-----CGgaCGagGUGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 5943 0.68 0.550552
Target:  5'- gCGCGGgGGCGaCCggcgGCUCCGCC--CCGu -3'
miRNA:   3'- -GUGCCgUCGC-GGa---CGAGGUGGcuGGU- -5'
21488 5' -61.6 NC_004812.1 + 6016 0.73 0.297201
Target:  5'- gCGCGGCGGCGCCgccccgucgaggaGC-CCGCCG-CCGc -3'
miRNA:   3'- -GUGCCGUCGCGGa------------CGaGGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 8091 0.67 0.609368
Target:  5'- gGCGGCccGCGCCgccccccCUCCcCCGGCCc -3'
miRNA:   3'- gUGCCGu-CGCGGac-----GAGGuGGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 8562 0.71 0.357388
Target:  5'- aAgGGCccuGCGCCUGCagagCC-CCGACCGg -3'
miRNA:   3'- gUgCCGu--CGCGGACGa---GGuGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 9051 0.68 0.52177
Target:  5'- aCGCGGCcGCGCCgGCacccggaacCCGCCGcCCGu -3'
miRNA:   3'- -GUGCCGuCGCGGaCGa--------GGUGGCuGGU- -5'
21488 5' -61.6 NC_004812.1 + 9090 0.67 0.599488
Target:  5'- gGCGGCGGCGCgaagacgGCgccucggggCCACCgGACCc -3'
miRNA:   3'- gUGCCGUCGCGga-----CGa--------GGUGG-CUGGu -5'
21488 5' -61.6 NC_004812.1 + 9138 0.69 0.45715
Target:  5'- cCACGGUcGC-CCUGCUCUAUccccucugCGACCAg -3'
miRNA:   3'- -GUGCCGuCGcGGACGAGGUG--------GCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 9829 0.69 0.465226
Target:  5'- uCGCGGCccucguuGgGCCUcgacgacGCUCaCGCCGACCGu -3'
miRNA:   3'- -GUGCCGu------CgCGGA-------CGAG-GUGGCUGGU- -5'
21488 5' -61.6 NC_004812.1 + 10280 0.66 0.668736
Target:  5'- gACGGCGcGCGUUUGCcggCGCCGACg- -3'
miRNA:   3'- gUGCCGU-CGCGGACGag-GUGGCUGgu -5'
21488 5' -61.6 NC_004812.1 + 10751 0.7 0.429926
Target:  5'- gGCGGCGacGCGCCUGCgcgagacUCCGuccccgggcCCGGCCu -3'
miRNA:   3'- gUGCCGU--CGCGGACG-------AGGU---------GGCUGGu -5'
21488 5' -61.6 NC_004812.1 + 11980 0.68 0.550552
Target:  5'- cCGCGGgGGCGgg-GUUCCGCCGGCgGg -3'
miRNA:   3'- -GUGCCgUCGCggaCGAGGUGGCUGgU- -5'
21488 5' -61.6 NC_004812.1 + 12520 0.71 0.357388
Target:  5'- gUACGGCAGCGgggacuCCUccagcaGCUCCGCCaGGCCc -3'
miRNA:   3'- -GUGCCGUCGC------GGA------CGAGGUGG-CUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.