miRNA display CGI


Results 21 - 40 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 79052 0.66 0.944915
Target:  5'- -cGCGGCccAGCGGC-CGgacGCGuuuGCUCGu -3'
miRNA:   3'- gaCGCCG--UCGUCGuGC---UGCuu-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 121182 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 115237 0.66 0.940319
Target:  5'- uUGgGGguGguGCACcaACGAGGcCUCGg -3'
miRNA:   3'- gACgCCguCguCGUGc-UGCUUU-GAGC- -5'
21499 5' -54.8 NC_004812.1 + 66706 0.66 0.949272
Target:  5'- -cGCGGCGaaGGaCGCGGCGAAGaagaugccCUCGa -3'
miRNA:   3'- gaCGCCGUcgUC-GUGCUGCUUU--------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 39444 0.66 0.935484
Target:  5'- -cGcCGGuCAGCAGgGCGAUGGc-CUCGg -3'
miRNA:   3'- gaC-GCC-GUCGUCgUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 18853 0.66 0.925086
Target:  5'- --cCGGUGGCGGUACuGCGAAACgaggCGg -3'
miRNA:   3'- gacGCCGUCGUCGUGcUGCUUUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 56584 0.66 0.925086
Target:  5'- -cGCGGCcgccauGCAGCgacgaucgcGCGGCGcGAGCUCc -3'
miRNA:   3'- gaCGCCGu-----CGUCG---------UGCUGC-UUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 81439 0.66 0.930406
Target:  5'- -aGCGGCA--GGCGCGgaGCGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUcgUCGUGC--UGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 64185 0.66 0.937447
Target:  5'- -gGCGGCGGgggcCGGCACGugGGauAccagggcgccaagguGCUCGa -3'
miRNA:   3'- gaCGCCGUC----GUCGUGCugCU--U---------------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 147633 0.66 0.949272
Target:  5'- uCUGCGcGcCAGUgGGCGCGACGA--UUCGu -3'
miRNA:   3'- -GACGC-C-GUCG-UCGUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 47602 0.66 0.944466
Target:  5'- -cGCGGCgaccccgAGCGcGC-CGACG-GGCUCGg -3'
miRNA:   3'- gaCGCCG-------UCGU-CGuGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 106723 0.66 0.935484
Target:  5'- gCUGCuGGCgGGCgAGgGCGACGAGGCc-- -3'
miRNA:   3'- -GACG-CCG-UCG-UCgUGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 98739 0.66 0.930406
Target:  5'- -cGCGGgGGCAGCgcccccggcgGCGACGAcaggaGGCgcagCGa -3'
miRNA:   3'- gaCGCCgUCGUCG----------UGCUGCU-----UUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 66349 0.66 0.935484
Target:  5'- -cGgGGCAGCAGC-CGcCGAuGC-CGa -3'
miRNA:   3'- gaCgCCGUCGUCGuGCuGCUuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 67775 0.66 0.940319
Target:  5'- -gGCGGCGGCccggGGCGCgGGCGGc-UUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUG-CUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 117627 0.66 0.930406
Target:  5'- -gGCGGCgcgGGCcgccgGGCGCGGCGggG-UCGc -3'
miRNA:   3'- gaCGCCG---UCG-----UCGUGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 35474 0.66 0.949272
Target:  5'- -cGCGGCGuCGGCGCG-CGAGAUcccCGa -3'
miRNA:   3'- gaCGCCGUcGUCGUGCuGCUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 31095 0.66 0.930406
Target:  5'- cCUGCgGGUGGCAuuGgGCGGCGggGCg-- -3'
miRNA:   3'- -GACG-CCGUCGU--CgUGCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 26199 0.66 0.946686
Target:  5'- -gGCGGCGcGUAGUccGCcagcaggcucugggaGGCGGGACUCGa -3'
miRNA:   3'- gaCGCCGU-CGUCG--UG---------------CUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 73872 0.66 0.944915
Target:  5'- -cGCGGU--CAGgGCGGCGuacAGCUCGg -3'
miRNA:   3'- gaCGCCGucGUCgUGCUGCu--UUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.