miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 121182 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 149095 0.66 0.935484
Target:  5'- -gGCGGCGcGCcGCGgGGCGggGgUUGg -3'
miRNA:   3'- gaCGCCGU-CGuCGUgCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 85709 0.66 0.935978
Target:  5'- cCUGCGGgGGCGGCccacuggccgcacguGCGccuacgcggccuucGCGGAGCUgGg -3'
miRNA:   3'- -GACGCCgUCGUCG---------------UGC--------------UGCUUUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 19878 0.66 0.935484
Target:  5'- -aGCGucucCAGCGGCGCGGCGGcggggGACgCGg -3'
miRNA:   3'- gaCGCc---GUCGUCGUGCUGCU-----UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 37399 0.66 0.925086
Target:  5'- gUGCaGCAGCGGCcGCG-CGAGAaggCGg -3'
miRNA:   3'- gACGcCGUCGUCG-UGCuGCUUUga-GC- -5'
21499 5' -54.8 NC_004812.1 + 106723 0.66 0.935484
Target:  5'- gCUGCuGGCgGGCgAGgGCGACGAGGCc-- -3'
miRNA:   3'- -GACG-CCG-UCG-UCgUGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 98739 0.66 0.930406
Target:  5'- -cGCGGgGGCAGCgcccccggcgGCGACGAcaggaGGCgcagCGa -3'
miRNA:   3'- gaCGCCgUCGUCG----------UGCUGCU-----UUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 110472 0.66 0.935484
Target:  5'- cCUGCGGCuGCcGUACuucGCGAAGgUCa -3'
miRNA:   3'- -GACGCCGuCGuCGUGc--UGCUUUgAGc -5'
21499 5' -54.8 NC_004812.1 + 12024 0.66 0.935484
Target:  5'- cCUGCucggcguccGGCAGCAcGCACGcCGAcGACgUCGc -3'
miRNA:   3'- -GACG---------CCGUCGU-CGUGCuGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 39444 0.66 0.935484
Target:  5'- -cGcCGGuCAGCAGgGCGAUGGc-CUCGg -3'
miRNA:   3'- gaC-GCC-GUCGUCgUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 100034 0.66 0.930406
Target:  5'- gCUGCauGGCGGCcGCGCGuccgaGCGggGgUCa -3'
miRNA:   3'- -GACG--CCGUCGuCGUGC-----UGCuuUgAGc -5'
21499 5' -54.8 NC_004812.1 + 31095 0.66 0.930406
Target:  5'- cCUGCgGGUGGCAuuGgGCGGCGggGCg-- -3'
miRNA:   3'- -GACG-CCGUCGU--CgUGCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 117627 0.66 0.930406
Target:  5'- -gGCGGCgcgGGCcgccgGGCGCGGCGggG-UCGc -3'
miRNA:   3'- gaCGCCG---UCG-----UCGUGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 55887 0.66 0.925086
Target:  5'- gUGUGGUcGUAGCACGcGCGGAugagggcCUCGa -3'
miRNA:   3'- gACGCCGuCGUCGUGC-UGCUUu------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 66349 0.66 0.935484
Target:  5'- -cGgGGCAGCAGC-CGcCGAuGC-CGa -3'
miRNA:   3'- gaCgCCGUCGUCGuGCuGCUuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 5020 0.66 0.935484
Target:  5'- -gGCGGCagguggGGCGGCA-GGCGggGCa-- -3'
miRNA:   3'- gaCGCCG------UCGUCGUgCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 28535 0.66 0.935484
Target:  5'- --cCGGCGGCAGCgaGCGGCccGACcUCGg -3'
miRNA:   3'- gacGCCGUCGUCG--UGCUGcuUUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 66706 0.66 0.949272
Target:  5'- -cGCGGCGaaGGaCGCGGCGAAGaagaugccCUCGa -3'
miRNA:   3'- gaCGCCGUcgUC-GUGCUGCUUU--------GAGC- -5'
21499 5' -54.8 NC_004812.1 + 747 0.66 0.935484
Target:  5'- -gGUGGgGGCGGCGCGACc---CUCu -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUGcuuuGAGc -5'
21499 5' -54.8 NC_004812.1 + 36160 0.66 0.925086
Target:  5'- -gGCGGCgcagGGguGCGCGGgGucGCUCu -3'
miRNA:   3'- gaCGCCG----UCguCGUGCUgCuuUGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.