miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 53 0.68 0.851005
Target:  5'- -cGCGggcGCGGCGGCGCGGCGccACgcgCGc -3'
miRNA:   3'- gaCGC---CGUCGUCGUGCUGCuuUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 747 0.66 0.935484
Target:  5'- -gGUGGgGGCGGCGCGACc---CUCu -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUGcuuuGAGc -5'
21499 5' -54.8 NC_004812.1 + 2163 0.72 0.682185
Target:  5'- -cGCGGCGGCGGCcaccuccACGGCGGcGGCgUCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGCUGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 2229 0.67 0.919523
Target:  5'- -cGCGGCccAGCGcacGCGCGGCGcgGCggCGg -3'
miRNA:   3'- gaCGCCG--UCGU---CGUGCUGCuuUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 2277 0.69 0.817665
Target:  5'- -cGCGcGCAGCacgagcGGCGCGGCGucgggguccGGCUCGa -3'
miRNA:   3'- gaCGC-CGUCG------UCGUGCUGCu--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 2487 0.7 0.762707
Target:  5'- -gGCGGCGGCGGCcucGCGgGCGGgcGAgUCGg -3'
miRNA:   3'- gaCGCCGUCGUCG---UGC-UGCU--UUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 2535 0.78 0.35012
Target:  5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3'
miRNA:   3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 2566 0.71 0.743348
Target:  5'- -gGCGGCAGgGGCACGGgcgugucgggccCGAGGCgCGu -3'
miRNA:   3'- gaCGCCGUCgUCGUGCU------------GCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 2641 0.74 0.560081
Target:  5'- -cGCGGCGGCGGCGCGuccggguaGAGGCgcgCGc -3'
miRNA:   3'- gaCGCCGUCGUCGUGCug------CUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 2714 0.67 0.894867
Target:  5'- -cGCGGCcggaGGcCAGCACGGCGcgGCg-- -3'
miRNA:   3'- gaCGCCG----UC-GUCGUGCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 2778 0.74 0.549982
Target:  5'- -cGCGGCgGGCAGCACGGCGcaGGGCa-- -3'
miRNA:   3'- gaCGCCG-UCGUCGUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 2810 0.71 0.703523
Target:  5'- -cGUGGCGGC-GCGCGACGGcgGGCccgUCGg -3'
miRNA:   3'- gaCGCCGUCGuCGUGCUGCU--UUG---AGC- -5'
21499 5' -54.8 NC_004812.1 + 2882 0.75 0.510211
Target:  5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3'
miRNA:   3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 3196 0.71 0.743348
Target:  5'- ---aGGCGGCGGCGCGGCGcAGCg-- -3'
miRNA:   3'- gacgCCGUCGUCGUGCUGCuUUGagc -5'
21499 5' -54.8 NC_004812.1 + 3228 0.7 0.781594
Target:  5'- -cGCGGCGGgccgaaGGCGCGGcCGGAgccggGCUCGg -3'
miRNA:   3'- gaCGCCGUCg-----UCGUGCU-GCUU-----UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 3395 0.68 0.858854
Target:  5'- -gGCGGCGGCggagGGCGcCGGCGuguGGCUgGg -3'
miRNA:   3'- gaCGCCGUCG----UCGU-GCUGCu--UUGAgC- -5'
21499 5' -54.8 NC_004812.1 + 3432 0.69 0.826277
Target:  5'- -gGCGGCAcGCGGCGCcagccgccGCGggGgUCGg -3'
miRNA:   3'- gaCGCCGU-CGUCGUGc-------UGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 3584 0.76 0.45299
Target:  5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 3710 0.81 0.240591
Target:  5'- -gGCGGCGGCGGCGcCGGCGGAGCg-- -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 3764 0.76 0.471691
Target:  5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3'
miRNA:   3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.