miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 63624 1.08 0.004216
Target:  5'- cCUGCGGCAGCAGCACGACGAAACUCGc -3'
miRNA:   3'- -GACGCCGUCGUCGUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 138039 0.84 0.169631
Target:  5'- gUGCGGCGGCGGCgGCGGCGGAGCg-- -3'
miRNA:   3'- gACGCCGUCGUCG-UGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 101043 0.82 0.202427
Target:  5'- gCUGCGuGCgcgAGCAGCGCGGCG-AGCUCGa -3'
miRNA:   3'- -GACGC-CG---UCGUCGUGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 144052 0.81 0.233075
Target:  5'- gUGCGGCGGCGGCACGccgccgggggccugGCGGAGCUg- -3'
miRNA:   3'- gACGCCGUCGUCGUGC--------------UGCUUUGAgc -5'
21499 5' -54.8 NC_004812.1 + 3710 0.81 0.240591
Target:  5'- -gGCGGCGGCGGCGcCGGCGGAGCg-- -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 129218 0.81 0.240591
Target:  5'- -gGCGGCGGCGGCGcCGGCGGAGCg-- -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 144402 0.81 0.246509
Target:  5'- -gGCGGCgugguacgAGCGGCGCGACGGcGGCUCGg -3'
miRNA:   3'- gaCGCCG--------UCGUCGUGCUGCU-UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 12895 0.81 0.261204
Target:  5'- -aGCGGCgcucggugcccccggGGCGGCGCGGCGAGcGCUCGa -3'
miRNA:   3'- gaCGCCG---------------UCGUCGUGCUGCUU-UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 100142 0.8 0.264988
Target:  5'- -gGCGGCgcgGGCGGCGgGGCGggGCUCa -3'
miRNA:   3'- gaCGCCG---UCGUCGUgCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 129441 0.8 0.271392
Target:  5'- -cGCGGCGGCGGCACGGCGc-GCgCGg -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 3933 0.8 0.271392
Target:  5'- -cGCGGCGGCGGCACGGCGc-GCgCGg -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 103630 0.78 0.349336
Target:  5'- -cGCGGCGGUAGCucuccucGCGggcGCGGAGCUCGg -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 2535 0.78 0.35012
Target:  5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3'
miRNA:   3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128043 0.78 0.35012
Target:  5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3'
miRNA:   3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 80483 0.78 0.35012
Target:  5'- -cGCGGCGGCGcGC-CGACG-AGCUCGa -3'
miRNA:   3'- gaCGCCGUCGU-CGuGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 20031 0.78 0.366071
Target:  5'- -cGCGGCAaaacagguagaGCAGCACGugGAGGCggucgCGg -3'
miRNA:   3'- gaCGCCGU-----------CGUCGUGCugCUUUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 83196 0.77 0.382515
Target:  5'- -cGCGGCGGgaGGCGCGGCGGccgcGCUCGg -3'
miRNA:   3'- gaCGCCGUCg-UCGUGCUGCUu---UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 130828 0.77 0.425716
Target:  5'- gCUGCGGCGGgGGCugACGACGGc-CUCGa -3'
miRNA:   3'- -GACGCCGUCgUCG--UGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 138289 0.77 0.425716
Target:  5'- cCUGCgGGCGGUGGuCGCGGCG-GGCUCGg -3'
miRNA:   3'- -GACG-CCGUCGUC-GUGCUGCuUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 109493 0.77 0.425716
Target:  5'- gUGCGGCGGCuGCugcgucucgccGCGACGGAGC-CGg -3'
miRNA:   3'- gACGCCGUCGuCG-----------UGCUGCUUUGaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.