miRNA display CGI


Results 1 - 20 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 123564 0.74 0.570231
Target:  5'- -gGCGaGCgaGGCGGCGCGGCcGGGCUCGa -3'
miRNA:   3'- gaCGC-CG--UCGUCGUGCUGcUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 129272 0.76 0.471691
Target:  5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3'
miRNA:   3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5'
21499 5' -54.8 NC_004812.1 + 75987 0.75 0.481187
Target:  5'- -gGCGGC-GCAGCuCGACGGcgucgAACUCGg -3'
miRNA:   3'- gaCGCCGuCGUCGuGCUGCU-----UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 85017 0.75 0.510211
Target:  5'- -aGCGGCuGUAcGCGCG-CGggGCUCGu -3'
miRNA:   3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128390 0.75 0.510211
Target:  5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3'
miRNA:   3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 26105 0.74 0.546963
Target:  5'- gUGgGGCGGCAGCGCGuccgggaucGCGAccgccgaccacccgGGCUCGa -3'
miRNA:   3'- gACgCCGUCGUCGUGC---------UGCU--------------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 36016 0.74 0.549982
Target:  5'- gCUGCGGUGGCGG-GCGGCG-AugUCGg -3'
miRNA:   3'- -GACGCCGUCGUCgUGCUGCuUugAGC- -5'
21499 5' -54.8 NC_004812.1 + 128286 0.74 0.549982
Target:  5'- -cGCGGCgGGCAGCACGGCGcaGGGCa-- -3'
miRNA:   3'- gaCGCCG-UCGUCGUGCUGC--UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 128149 0.74 0.560081
Target:  5'- -cGCGGCGGCGGCGCGuccggguaGAGGCgcgCGc -3'
miRNA:   3'- gaCGCCGUCGUCGUGCug------CUUUGa--GC- -5'
21499 5' -54.8 NC_004812.1 + 128737 0.76 0.471691
Target:  5'- -cGCGGCGGCcgaaGGCGCGGcCGGAgccggGCUCGg -3'
miRNA:   3'- gaCGCCGUCG----UCGUGCU-GCUU-----UGAGC- -5'
21499 5' -54.8 NC_004812.1 + 129748 0.76 0.471691
Target:  5'- -gGCGGCGGCGGCGgCGGCGgcGCcCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 129092 0.76 0.45299
Target:  5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3'
miRNA:   3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 144402 0.81 0.246509
Target:  5'- -gGCGGCgugguacgAGCGGCGCGACGGcGGCUCGg -3'
miRNA:   3'- gaCGCCG--------UCGUCGUGCUGCU-UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 100142 0.8 0.264988
Target:  5'- -gGCGGCgcgGGCGGCGgGGCGggGCUCa -3'
miRNA:   3'- gaCGCCG---UCGUCGUgCUGCuuUGAGc -5'
21499 5' -54.8 NC_004812.1 + 129441 0.8 0.271392
Target:  5'- -cGCGGCGGCGGCACGGCGc-GCgCGg -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 103630 0.78 0.349336
Target:  5'- -cGCGGCGGUAGCucuccucGCGggcGCGGAGCUCGg -3'
miRNA:   3'- gaCGCCGUCGUCG-------UGC---UGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 128043 0.78 0.35012
Target:  5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3'
miRNA:   3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 20031 0.78 0.366071
Target:  5'- -cGCGGCAaaacagguagaGCAGCACGugGAGGCggucgCGg -3'
miRNA:   3'- gaCGCCGU-----------CGUCGUGCugCUUUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 109493 0.77 0.425716
Target:  5'- gUGCGGCGGCuGCugcgucucgccGCGACGGAGC-CGg -3'
miRNA:   3'- gACGCCGUCGuCG-----------UGCUGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 21803 0.76 0.434699
Target:  5'- -aGCGGCGGCAGaagcggGCGGCGAu-CUCGg -3'
miRNA:   3'- gaCGCCGUCGUCg-----UGCUGCUuuGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.