miRNA display CGI


Results 41 - 60 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 23587 0.66 0.935484
Target:  5'- -gGCGGCGcGCcGCGgGGCGggGgUUGg -3'
miRNA:   3'- gaCGCCGU-CGuCGUgCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 106216 0.66 0.935484
Target:  5'- -gGUGGCGGaagggggcgaCGGCgGCGuCGAGGCUCGu -3'
miRNA:   3'- gaCGCCGUC----------GUCG-UGCuGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 31648 0.66 0.935484
Target:  5'- -gGUGGgGGCGGCGCGACc---CUCu -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUGcuuuGAGc -5'
21499 5' -54.8 NC_004812.1 + 119481 0.66 0.935484
Target:  5'- uCUGCGccGCGGCGGC-CGACGcGGGCg-- -3'
miRNA:   3'- -GACGC--CGUCGUCGuGCUGC-UUUGagc -5'
21499 5' -54.8 NC_004812.1 + 56809 0.66 0.935484
Target:  5'- -cGCGGCgcagcuGGCGGCGCGcCGccacAACUCc -3'
miRNA:   3'- gaCGCCG------UCGUCGUGCuGCu---UUGAGc -5'
21499 5' -54.8 NC_004812.1 + 12024 0.66 0.935484
Target:  5'- cCUGCucggcguccGGCAGCAcGCACGcCGAcGACgUCGc -3'
miRNA:   3'- -GACG---------CCGUCGU-CGUGCuGCU-UUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 106723 0.66 0.935484
Target:  5'- gCUGCuGGCgGGCgAGgGCGACGAGGCc-- -3'
miRNA:   3'- -GACG-CCG-UCG-UCgUGCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 97169 0.66 0.935484
Target:  5'- -cGCGaccgaGCGGguG-AUGGCGGAGCUCGa -3'
miRNA:   3'- gaCGC-----CGUCguCgUGCUGCUUUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 152083 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 19878 0.66 0.935484
Target:  5'- -aGCGucucCAGCGGCGCGGCGGcggggGACgCGg -3'
miRNA:   3'- gaCGCc---GUCGUCGUGCUGCU-----UUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 39444 0.66 0.935484
Target:  5'- -cGcCGGuCAGCAGgGCGAUGGc-CUCGg -3'
miRNA:   3'- gaC-GCC-GUCGUCgUGCUGCUuuGAGC- -5'
21499 5' -54.8 NC_004812.1 + 66349 0.66 0.935484
Target:  5'- -cGgGGCAGCAGC-CGcCGAuGC-CGa -3'
miRNA:   3'- gaCgCCGUCGUCGuGCuGCUuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 5020 0.66 0.935484
Target:  5'- -gGCGGCagguggGGCGGCA-GGCGggGCa-- -3'
miRNA:   3'- gaCGCCG------UCGUCGUgCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 121182 0.66 0.935484
Target:  5'- gCUGCGGCcgcccAGCAGCGCGcCcu-GgUCGa -3'
miRNA:   3'- -GACGCCG-----UCGUCGUGCuGcuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 747 0.66 0.935484
Target:  5'- -gGUGGgGGCGGCGCGACc---CUCu -3'
miRNA:   3'- gaCGCCgUCGUCGUGCUGcuuuGAGc -5'
21499 5' -54.8 NC_004812.1 + 31095 0.66 0.930406
Target:  5'- cCUGCgGGUGGCAuuGgGCGGCGggGCg-- -3'
miRNA:   3'- -GACG-CCGUCGU--CgUGCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 98739 0.66 0.930406
Target:  5'- -cGCGGgGGCAGCgcccccggcgGCGACGAcaggaGGCgcagCGa -3'
miRNA:   3'- gaCGCCgUCGUCG----------UGCUGCU-----UUGa---GC- -5'
21499 5' -54.8 NC_004812.1 + 81439 0.66 0.930406
Target:  5'- -aGCGGCA--GGCGCGgaGCGAGGC-CGa -3'
miRNA:   3'- gaCGCCGUcgUCGUGC--UGCUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 117627 0.66 0.930406
Target:  5'- -gGCGGCgcgGGCcgccgGGCGCGGCGggG-UCGc -3'
miRNA:   3'- gaCGCCG---UCG-----UCGUGCUGCuuUgAGC- -5'
21499 5' -54.8 NC_004812.1 + 100034 0.66 0.930406
Target:  5'- gCUGCauGGCGGCcGCGCGuccgaGCGggGgUCa -3'
miRNA:   3'- -GACG--CCGUCGuCGUGC-----UGCuuUgAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.