miRNA display CGI


Results 21 - 40 of 396 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21499 5' -54.8 NC_004812.1 + 3909 0.72 0.662718
Target:  5'- -cGCGGCGGC-GCgGCGGCGggGC-CGn -3'
miRNA:   3'- gaCGCCGUCGuCG-UGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 3933 0.8 0.271392
Target:  5'- -cGCGGCGGCGGCACGGCGc-GCgCGg -3'
miRNA:   3'- gaCGCCGUCGUCGUGCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 4045 0.72 0.662718
Target:  5'- -gGCGGCGGCGGCcGCGGCGucg-UCGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUGCuuugAGC- -5'
21499 5' -54.8 NC_004812.1 + 4158 0.69 0.834709
Target:  5'- -gGCGGC-GCuGCGCGGCGAuGACgcccgCGg -3'
miRNA:   3'- gaCGCCGuCGuCGUGCUGCU-UUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 4240 0.76 0.471691
Target:  5'- -gGCGGCGGCGGCGgCGGCGgcGCcCGc -3'
miRNA:   3'- gaCGCCGUCGUCGU-GCUGCuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 4350 0.66 0.940319
Target:  5'- -aGCGGCGGCu-CAUGGCGAcGGCggCGg -3'
miRNA:   3'- gaCGCCGUCGucGUGCUGCU-UUGa-GC- -5'
21499 5' -54.8 NC_004812.1 + 4751 0.68 0.88113
Target:  5'- -gGgGGCGGCGGCuCGGCGccgggccacGGCUCGc -3'
miRNA:   3'- gaCgCCGUCGUCGuGCUGCu--------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 4903 0.66 0.949272
Target:  5'- -gGCGGC-GCGcGCGCGcCGccGCUCGc -3'
miRNA:   3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 4955 0.7 0.799938
Target:  5'- -gGCGGCcggcgGGCGGCcggcgGCGGCGAGGCgggggCGa -3'
miRNA:   3'- gaCGCCG-----UCGUCG-----UGCUGCUUUGa----GC- -5'
21499 5' -54.8 NC_004812.1 + 5020 0.66 0.935484
Target:  5'- -gGCGGCagguggGGCGGCA-GGCGggGCa-- -3'
miRNA:   3'- gaCGCCG------UCGUCGUgCUGCuuUGagc -5'
21499 5' -54.8 NC_004812.1 + 5266 0.69 0.817665
Target:  5'- -cGCGGCAGgGGCACGGaggcgggggGAGGCcCGg -3'
miRNA:   3'- gaCGCCGUCgUCGUGCUg--------CUUUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 5326 0.7 0.775982
Target:  5'- -cGCGGCAGgGGCACGGaggcggggggaggccCGGgagaggcggcaGACUCGg -3'
miRNA:   3'- gaCGCCGUCgUCGUGCU---------------GCU-----------UUGAGC- -5'
21499 5' -54.8 NC_004812.1 + 5349 0.67 0.907672
Target:  5'- -gGuCGGCGGgGGCGCGGCG--GCgUCGa -3'
miRNA:   3'- gaC-GCCGUCgUCGUGCUGCuuUG-AGC- -5'
21499 5' -54.8 NC_004812.1 + 5502 0.69 0.808883
Target:  5'- -gGCGGCGGCGGCcGCGGgGAAGg-CGu -3'
miRNA:   3'- gaCGCCGUCGUCG-UGCUgCUUUgaGC- -5'
21499 5' -54.8 NC_004812.1 + 5833 0.69 0.842954
Target:  5'- uCUGCGGgcCGGCGGCGCGcuCGGGAggCGg -3'
miRNA:   3'- -GACGCC--GUCGUCGUGCu-GCUUUgaGC- -5'
21499 5' -54.8 NC_004812.1 + 6839 0.67 0.901388
Target:  5'- -gGCGGCGGCccucGCGguCGGCGAGGCg-- -3'
miRNA:   3'- gaCGCCGUCGu---CGU--GCUGCUUUGagc -5'
21499 5' -54.8 NC_004812.1 + 7536 0.7 0.766524
Target:  5'- -gGCGGCgaugcgcggggacggGGgAGCGCGGgGAGACUCu -3'
miRNA:   3'- gaCGCCG---------------UCgUCGUGCUgCUUUGAGc -5'
21499 5' -54.8 NC_004812.1 + 7635 0.68 0.86574
Target:  5'- -cGCGGCGGCcggggucGGgGCG-CGAAGCUgCGg -3'
miRNA:   3'- gaCGCCGUCG-------UCgUGCuGCUUUGA-GC- -5'
21499 5' -54.8 NC_004812.1 + 7925 0.68 0.866495
Target:  5'- gCUGCGGCGcGCgccGGCGCGGCcggGggGCgCGu -3'
miRNA:   3'- -GACGCCGU-CG---UCGUGCUG---CuuUGaGC- -5'
21499 5' -54.8 NC_004812.1 + 8374 0.7 0.799938
Target:  5'- -gGCGGCcgccggGGCccgggguccgggGGCGCGGCGggGgCUCGg -3'
miRNA:   3'- gaCGCCG------UCG------------UCGUGCUGCuuU-GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.