Results 21 - 40 of 396 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21499 | 5' | -54.8 | NC_004812.1 | + | 123564 | 0.74 | 0.570231 |
Target: 5'- -gGCGaGCgaGGCGGCGCGGCcGGGCUCGa -3' miRNA: 3'- gaCGC-CG--UCGUCGUGCUGcUUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128149 | 0.74 | 0.560081 |
Target: 5'- -cGCGGCGGCGGCGCGuccggguaGAGGCgcgCGc -3' miRNA: 3'- gaCGCCGUCGUCGUGCug------CUUUGa--GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 21803 | 0.76 | 0.434699 |
Target: 5'- -aGCGGCGGCAGaagcggGCGGCGAu-CUCGg -3' miRNA: 3'- gaCGCCGUCGUCg-----UGCUGCUuuGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 109493 | 0.77 | 0.425716 |
Target: 5'- gUGCGGCGGCuGCugcgucucgccGCGACGGAGC-CGg -3' miRNA: 3'- gACGCCGUCGuCG-----------UGCUGCUUUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 20031 | 0.78 | 0.366071 |
Target: 5'- -cGCGGCAaaacagguagaGCAGCACGugGAGGCggucgCGg -3' miRNA: 3'- gaCGCCGU-----------CGUCGUGCugCUUUGa----GC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128043 | 0.78 | 0.35012 |
Target: 5'- -cGCgGGCAGCacGGCGCGGCGguACUCGc -3' miRNA: 3'- gaCG-CCGUCG--UCGUGCUGCuuUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 103630 | 0.78 | 0.349336 |
Target: 5'- -cGCGGCGGUAGCucuccucGCGggcGCGGAGCUCGg -3' miRNA: 3'- gaCGCCGUCGUCG-------UGC---UGCUUUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129441 | 0.8 | 0.271392 |
Target: 5'- -cGCGGCGGCGGCACGGCGc-GCgCGg -3' miRNA: 3'- gaCGCCGUCGUCGUGCUGCuuUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 100142 | 0.8 | 0.264988 |
Target: 5'- -gGCGGCgcgGGCGGCGgGGCGggGCUCa -3' miRNA: 3'- gaCGCCG---UCGUCGUgCUGCuuUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 144402 | 0.81 | 0.246509 |
Target: 5'- -gGCGGCgugguacgAGCGGCGCGACGGcGGCUCGg -3' miRNA: 3'- gaCGCCG--------UCGUCGUGCUGCU-UUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129092 | 0.76 | 0.45299 |
Target: 5'- -gGCGGCGGCGGCGggcgggcgcgcCGGCGAggAGCUCu -3' miRNA: 3'- gaCGCCGUCGUCGU-----------GCUGCU--UUGAGc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129748 | 0.76 | 0.471691 |
Target: 5'- -gGCGGCGGCGGCGgCGGCGgcGCcCGc -3' miRNA: 3'- gaCGCCGUCGUCGU-GCUGCuuUGaGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128286 | 0.74 | 0.549982 |
Target: 5'- -cGCGGCgGGCAGCACGGCGcaGGGCa-- -3' miRNA: 3'- gaCGCCG-UCGUCGUGCUGC--UUUGagc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 36016 | 0.74 | 0.549982 |
Target: 5'- gCUGCGGUGGCGG-GCGGCG-AugUCGg -3' miRNA: 3'- -GACGCCGUCGUCgUGCUGCuUugAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 26105 | 0.74 | 0.546963 |
Target: 5'- gUGgGGCGGCAGCGCGuccgggaucGCGAccgccgaccacccgGGCUCGa -3' miRNA: 3'- gACgCCGUCGUCGUGC---------UGCU--------------UUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128390 | 0.75 | 0.510211 |
Target: 5'- -gGCGGcCGGCGGCgGCGGCGAGcaggccgagguACUCGa -3' miRNA: 3'- gaCGCC-GUCGUCG-UGCUGCUU-----------UGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 85017 | 0.75 | 0.510211 |
Target: 5'- -aGCGGCuGUAcGCGCG-CGggGCUCGu -3' miRNA: 3'- gaCGCCGuCGU-CGUGCuGCuuUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 75987 | 0.75 | 0.481187 |
Target: 5'- -gGCGGC-GCAGCuCGACGGcgucgAACUCGg -3' miRNA: 3'- gaCGCCGuCGUCGuGCUGCU-----UUGAGC- -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 129272 | 0.76 | 0.471691 |
Target: 5'- -cGCGGCGGC-GCcgGCGACGAGGCUg- -3' miRNA: 3'- gaCGCCGUCGuCG--UGCUGCUUUGAgc -5' |
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21499 | 5' | -54.8 | NC_004812.1 | + | 128737 | 0.76 | 0.471691 |
Target: 5'- -cGCGGCGGCcgaaGGCGCGGcCGGAgccggGCUCGg -3' miRNA: 3'- gaCGCCGUCG----UCGUGCU-GCUU-----UGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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