miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
215 3' -49.5 AC_000008.1 + 8124 0.66 0.922544
Target:  5'- -aUUGAUCCGGAuagugGC-CGGGAggUcCCg -3'
miRNA:   3'- gaAACUGGGCCU-----UGcGCCUUuuGuGG- -5'
215 3' -49.5 AC_000008.1 + 23443 0.66 0.91609
Target:  5'- -gUUGGCCugcggcugcugcCGGAACGCgucaGGAuuGCGCg -3'
miRNA:   3'- gaAACUGG------------GCCUUGCG----CCUuuUGUGg -5'
215 3' -49.5 AC_000008.1 + 16970 0.66 0.909326
Target:  5'- ---cGuCUCGGuGGCGCGGGcaaacuGCACCa -3'
miRNA:   3'- gaaaCuGGGCC-UUGCGCCUuu----UGUGG- -5'
215 3' -49.5 AC_000008.1 + 10464 0.66 0.902255
Target:  5'- ---cGGCCaCGGAGCGCucguuGAAgGCCg -3'
miRNA:   3'- gaaaCUGG-GCCUUGCGccu--UUUgUGG- -5'
215 3' -49.5 AC_000008.1 + 12119 0.66 0.902255
Target:  5'- aCUUUGACgCGG-GCGCuGAccuGCGCUg -3'
miRNA:   3'- -GAAACUGgGCCuUGCGcCUuu-UGUGG- -5'
215 3' -49.5 AC_000008.1 + 5480 0.66 0.897865
Target:  5'- --gUGGCCCuuGGCGCGcagcuugcccuuggaGGAGGCGCCg -3'
miRNA:   3'- gaaACUGGGccUUGCGC---------------CUUUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 26223 0.66 0.894879
Target:  5'- ---cGAUCCGGucGAUGCGGAcu-CGCUc -3'
miRNA:   3'- gaaaCUGGGCC--UUGCGCCUuuuGUGG- -5'
215 3' -49.5 AC_000008.1 + 12553 0.67 0.887203
Target:  5'- ---aGACCUGGcugAACGaGGA--GCACCg -3'
miRNA:   3'- gaaaCUGGGCC---UUGCgCCUuuUGUGG- -5'
215 3' -49.5 AC_000008.1 + 26684 0.67 0.887203
Target:  5'- ---aGGCCaUGGAGCGCcuugaggccuuGGggGAUAUCa -3'
miRNA:   3'- gaaaCUGG-GCCUUGCG-----------CCuuUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 7990 0.67 0.887203
Target:  5'- ------aCCGGAGuCGCGGGcaAAGCACUu -3'
miRNA:   3'- gaaacugGGCCUU-GCGCCU--UUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 3743 0.67 0.876787
Target:  5'- -cUUGACCUacgagaccgugucuGGAACGCcguuGGAGACugCa -3'
miRNA:   3'- gaAACUGGG--------------CCUUGCGc---CUUUUGugG- -5'
215 3' -49.5 AC_000008.1 + 30614 0.67 0.870977
Target:  5'- --aUGACCCuGGccCGUcuGGAcGAGCACCg -3'
miRNA:   3'- gaaACUGGG-CCuuGCG--CCU-UUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 30546 0.67 0.869292
Target:  5'- ----aGCCCGGAGCGCaccccuuCACCg -3'
miRNA:   3'- gaaacUGGGCCUUGCGccuuuu-GUGG- -5'
215 3' -49.5 AC_000008.1 + 12184 0.67 0.853634
Target:  5'- ---gGACCUGGGcugGCGGu-GGCACCc -3'
miRNA:   3'- gaaaCUGGGCCUug-CGCCuuUUGUGG- -5'
215 3' -49.5 AC_000008.1 + 29908 0.67 0.853634
Target:  5'- ----cACCCGGucACGUGGccuACACCu -3'
miRNA:   3'- gaaacUGGGCCu-UGCGCCuuuUGUGG- -5'
215 3' -49.5 AC_000008.1 + 362 0.68 0.844565
Target:  5'- aCUUUGACCguuuACGUGGAGAcuCGCCc -3'
miRNA:   3'- -GAAACUGGgccuUGCGCCUUUu-GUGG- -5'
215 3' -49.5 AC_000008.1 + 15045 0.68 0.844565
Target:  5'- ---aGGCCCaGc-CGCGGAAAGcCGCCc -3'
miRNA:   3'- gaaaCUGGGcCuuGCGCCUUUU-GUGG- -5'
215 3' -49.5 AC_000008.1 + 68 0.68 0.835244
Target:  5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3'
miRNA:   3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5'
215 3' -49.5 AC_000008.1 + 68 0.68 0.835244
Target:  5'- --gUGGCgCGGGGCGUGGGAAcgGgGCg -3'
miRNA:   3'- gaaACUGgGCCUUGCGCCUUU--UgUGg -5'
215 3' -49.5 AC_000008.1 + 18891 0.68 0.825682
Target:  5'- gCUUUaGGCCgcgcuuuucuuCGGAcggugcaaGCGCGGgcAGCACCu -3'
miRNA:   3'- -GAAA-CUGG-----------GCCU--------UGCGCCuuUUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.