miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21501 3' -60.6 NC_004812.1 + 137314 0.66 0.697352
Target:  5'- gGC-CCGCG-UUCgCCCCCUCgacaCCg -3'
miRNA:   3'- gCGcGGCGCaAAGgGGGGGAGaa--GGa -5'
21501 3' -60.6 NC_004812.1 + 56765 0.66 0.697352
Target:  5'- --gGCCGCGacgUCCCCCuCCUCccCCc -3'
miRNA:   3'- gcgCGGCGCaa-AGGGGG-GGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 134306 0.66 0.697352
Target:  5'- gGCGCCGaGg--CCCCCCCg---CCa -3'
miRNA:   3'- gCGCGGCgCaaaGGGGGGGagaaGGa -5'
21501 3' -60.6 NC_004812.1 + 85215 0.66 0.697352
Target:  5'- cCGCGCCcgcuGCGa--CCCCCgCCUCgcccgUCCc -3'
miRNA:   3'- -GCGCGG----CGCaaaGGGGG-GGAGa----AGGa -5'
21501 3' -60.6 NC_004812.1 + 138073 0.67 0.68762
Target:  5'- aCGCGCCGCcaugCgCCgCCUCgUUCCg -3'
miRNA:   3'- -GCGCGGCGcaaaGgGGgGGAG-AAGGa -5'
21501 3' -60.6 NC_004812.1 + 132462 0.67 0.68762
Target:  5'- -cCGCCcCGUUUCgcgCCCCCC-CUUCCc -3'
miRNA:   3'- gcGCGGcGCAAAG---GGGGGGaGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 6954 0.67 0.68762
Target:  5'- -cCGCCcCGUUUCgcgCCCCCC-CUUCCc -3'
miRNA:   3'- gcGCGGcGCAAAG---GGGGGGaGAAGGa -5'
21501 3' -60.6 NC_004812.1 + 1819 0.67 0.677845
Target:  5'- gCGCGCCuCGccucuccUCCCCCCUCcUCCc -3'
miRNA:   3'- -GCGCGGcGCaaa----GGGGGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 5718 0.67 0.677845
Target:  5'- gCGCGCCGacc-UCCCCCUguguCUCUcUCCg -3'
miRNA:   3'- -GCGCGGCgcaaAGGGGGG----GAGA-AGGa -5'
21501 3' -60.6 NC_004812.1 + 146857 0.67 0.677845
Target:  5'- gCGCGCCGCGgg-CCUgguggcgguCCCCUC--CCg -3'
miRNA:   3'- -GCGCGGCGCaaaGGG---------GGGGAGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 28040 0.67 0.677845
Target:  5'- gCGCGCgGCGg--CCUCUCCU--UCCUg -3'
miRNA:   3'- -GCGCGgCGCaaaGGGGGGGAgaAGGA- -5'
21501 3' -60.6 NC_004812.1 + 47165 0.67 0.677845
Target:  5'- cCGCGCCGCc---CUCUCCCUCggcgggCCUc -3'
miRNA:   3'- -GCGCGGCGcaaaGGGGGGGAGaa----GGA- -5'
21501 3' -60.6 NC_004812.1 + 127327 0.67 0.677845
Target:  5'- gCGCGCCuCGccucuccUCCCCCCUCcUCCc -3'
miRNA:   3'- -GCGCGGcGCaaa----GGGGGGGAGaAGGa -5'
21501 3' -60.6 NC_004812.1 + 131226 0.67 0.677845
Target:  5'- gCGCGCCGacc-UCCCCCUguguCUCUcUCCg -3'
miRNA:   3'- -GCGCGGCgcaaAGGGGGG----GAGA-AGGa -5'
21501 3' -60.6 NC_004812.1 + 153549 0.67 0.677845
Target:  5'- gCGCGCgGCGg--CCUCUCCU--UCCUg -3'
miRNA:   3'- -GCGCGgCGCaaaGGGGGGGAgaAGGA- -5'
21501 3' -60.6 NC_004812.1 + 60293 0.67 0.677845
Target:  5'- cCGcCGUCGCG---CCCCCCCUUgggggCCUu -3'
miRNA:   3'- -GC-GCGGCGCaaaGGGGGGGAGaa---GGA- -5'
21501 3' -60.6 NC_004812.1 + 23449 0.67 0.668035
Target:  5'- gGCgGCCGCGUUUgCCgCgCUCgucgUCCUc -3'
miRNA:   3'- gCG-CGGCGCAAAgGGgGgGAGa---AGGA- -5'
21501 3' -60.6 NC_004812.1 + 112156 0.67 0.668035
Target:  5'- cCGCGcCCGCGgcaugCUCCgCCUCU-CCg -3'
miRNA:   3'- -GCGC-GGCGCaaa--GGGGgGGAGAaGGa -5'
21501 3' -60.6 NC_004812.1 + 151756 0.67 0.668035
Target:  5'- gCGgGCCGCGg--CCCCUCCcCggCCc -3'
miRNA:   3'- -GCgCGGCGCaaaGGGGGGGaGaaGGa -5'
21501 3' -60.6 NC_004812.1 + 120855 0.67 0.668035
Target:  5'- gCGgGCCGCGg--CCCCUCCcCggCCc -3'
miRNA:   3'- -GCgCGGCGCaaaGGGGGGGaGaaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.