miRNA display CGI


Results 21 - 40 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 8393 0.66 0.983638
Target:  5'- cGGCCACCCaAGcGGCCCccc---CGCa -3'
miRNA:   3'- -CCGGUGGGcUCaUUGGGuaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 28101 0.66 0.984384
Target:  5'- cGGCCGCCUGGGccgGcaacuggaccggcccGCCCGacgUCUcggCGCu -3'
miRNA:   3'- -CCGGUGGGCUCa--U---------------UGGGUa--AGAa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 23784 0.66 0.988624
Target:  5'- cGGCCAUCCGAcgcGUGcgcgGCuCCAUgcgCgccgCGCg -3'
miRNA:   3'- -CCGGUGGGCU---CAU----UG-GGUAa--Gaa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 153610 0.66 0.984384
Target:  5'- cGGCCGCCUGGGccgGcaacuggaccggcccGCCCGacgUCUcggCGCu -3'
miRNA:   3'- -CCGGUGGGCUCa--U---------------UGGGUa--AGAa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 76614 0.66 0.988624
Target:  5'- uGGCCucggacacgGCCUGGGcGACCCGggg--CGCg -3'
miRNA:   3'- -CCGG---------UGGGCUCaUUGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 73068 0.66 0.989993
Target:  5'- gGGCCACgacgaCGGGggcGCCCAgaagCgUCGCc -3'
miRNA:   3'- -CCGGUGg----GCUCau-UGGGUaa--GaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 74382 0.66 0.989993
Target:  5'- -cCCGCCCGc---GCCCGUUUgggCGCg -3'
miRNA:   3'- ccGGUGGGCucauUGGGUAAGaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 51661 0.66 0.988624
Target:  5'- cGUCGgCCGGGccgcgGACCUGUUUgugUCGCa -3'
miRNA:   3'- cCGGUgGGCUCa----UUGGGUAAGa--AGCG- -5'
21511 3' -52.2 NC_004812.1 + 13010 0.66 0.987115
Target:  5'- cGCCGCCgGAGgcgGCCUgaUCgccgggggUCGCg -3'
miRNA:   3'- cCGGUGGgCUCau-UGGGuaAGa-------AGCG- -5'
21511 3' -52.2 NC_004812.1 + 94074 0.66 0.985105
Target:  5'- gGGCC-CCCGGG-AACCCcugccgcccgCU-CGCg -3'
miRNA:   3'- -CCGGuGGGCUCaUUGGGuaa-------GAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 131534 0.66 0.983638
Target:  5'- cGCCGCCCcgucGAGgaGCCCGccgCcgCGCg -3'
miRNA:   3'- cCGGUGGG----CUCauUGGGUaa-GaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 92411 0.66 0.985455
Target:  5'- gGGCCGCCCGAcacccCCCAUcUCgagUCa- -3'
miRNA:   3'- -CCGGUGGGCUcauu-GGGUA-AGa--AGcg -5'
21511 3' -52.2 NC_004812.1 + 78154 0.66 0.985455
Target:  5'- aGGCCggcaucGCCCGcgaGGUGACCgAgugCU-CGCg -3'
miRNA:   3'- -CCGG------UGGGC---UCAUUGGgUaa-GAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 6025 0.66 0.983638
Target:  5'- cGCCGCCCcgucGAGgaGCCCGccgCcgCGCg -3'
miRNA:   3'- cCGGUGGG----CUCauUGGGUaa-GaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 12940 0.66 0.983638
Target:  5'- cGUCGCCCGAGcc-CCCAgcgUCUUgaagucgaacggCGCu -3'
miRNA:   3'- cCGGUGGGCUCauuGGGUa--AGAA------------GCG- -5'
21511 3' -52.2 NC_004812.1 + 44639 0.66 0.989993
Target:  5'- gGGCCGCCCGccugAGCgCC--UCUaUCGCc -3'
miRNA:   3'- -CCGGUGGGCuca-UUG-GGuaAGA-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 116528 0.66 0.985105
Target:  5'- cGGCCGCCCGccgcccgccGCCCGgaaaagCGCa -3'
miRNA:   3'- -CCGGUGGGCucau-----UGGGUaagaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 17546 0.66 0.989993
Target:  5'- gGGCCAgCCuCGAGUGcguggcguauaACCCGcagggggUCcUCGCc -3'
miRNA:   3'- -CCGGU-GG-GCUCAU-----------UGGGUa------AGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 101759 0.66 0.989993
Target:  5'- cGCCAccCCCGGGUAgucGCCCucgUCgaaCGUc -3'
miRNA:   3'- cCGGU--GGGCUCAU---UGGGua-AGaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 136926 0.66 0.989993
Target:  5'- aGGCCGaCCGGGccGCCCucgUCccCGCg -3'
miRNA:   3'- -CCGGUgGGCUCauUGGGua-AGaaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.