miRNA display CGI


Results 1 - 20 of 214 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 92411 0.66 0.985455
Target:  5'- gGGCCGCCCGAcacccCCCAUcUCgagUCa- -3'
miRNA:   3'- -CCGGUGGGCUcauu-GGGUA-AGa--AGcg -5'
21511 3' -52.2 NC_004812.1 + 99350 0.66 0.983638
Target:  5'- aGCgCGCCgGAGUAGgCCAggaUCU-CGCc -3'
miRNA:   3'- cCG-GUGGgCUCAUUgGGUa--AGAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 51661 0.66 0.988624
Target:  5'- cGUCGgCCGGGccgcgGACCUGUUUgugUCGCa -3'
miRNA:   3'- cCGGUgGGCUCa----UUGGGUAAGa--AGCG- -5'
21511 3' -52.2 NC_004812.1 + 44885 0.66 0.983447
Target:  5'- cGGCgucgCACCCGAacgcgagcucgccGUGGCCCAga--UCGCc -3'
miRNA:   3'- -CCG----GUGGGCU-------------CAUUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 50885 0.66 0.983638
Target:  5'- gGGCCACCCccc-GGCCCggUgUUCGg -3'
miRNA:   3'- -CCGGUGGGcucaUUGGGuaAgAAGCg -5'
21511 3' -52.2 NC_004812.1 + 94074 0.66 0.985105
Target:  5'- gGGCC-CCCGGG-AACCCcugccgcccgCU-CGCg -3'
miRNA:   3'- -CCGGuGGGCUCaUUGGGuaa-------GAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 13010 0.66 0.987115
Target:  5'- cGCCGCCgGAGgcgGCCUgaUCgccgggggUCGCg -3'
miRNA:   3'- cCGGUGGgCUCau-UGGGuaAGa-------AGCG- -5'
21511 3' -52.2 NC_004812.1 + 131534 0.66 0.983638
Target:  5'- cGCCGCCCcgucGAGgaGCCCGccgCcgCGCg -3'
miRNA:   3'- cCGGUGGG----CUCauUGGGUaa-GaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 116528 0.66 0.985105
Target:  5'- cGGCCGCCCGccgcccgccGCCCGgaaaagCGCa -3'
miRNA:   3'- -CCGGUGGGCucau-----UGGGUaagaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 57835 0.66 0.985455
Target:  5'- cGCCGCCUcGGcGGCCCAcUCgcCGCc -3'
miRNA:   3'- cCGGUGGGcUCaUUGGGUaAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 117073 0.66 0.983638
Target:  5'- uGGCCGCCCGcucc-CCCGccCcUCGCg -3'
miRNA:   3'- -CCGGUGGGCucauuGGGUaaGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 76614 0.66 0.988624
Target:  5'- uGGCCucggacacgGCCUGGGcGACCCGggg--CGCg -3'
miRNA:   3'- -CCGG---------UGGGCUCaUUGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 44639 0.66 0.989993
Target:  5'- gGGCCGCCCGccugAGCgCC--UCUaUCGCc -3'
miRNA:   3'- -CCGGUGGGCuca-UUG-GGuaAGA-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 54549 0.66 0.987115
Target:  5'- cGGCgCGCCCGGcGcGGCCCcggCcUCGCc -3'
miRNA:   3'- -CCG-GUGGGCU-CaUUGGGuaaGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 17546 0.66 0.989993
Target:  5'- gGGCCAgCCuCGAGUGcguggcguauaACCCGcagggggUCcUCGCc -3'
miRNA:   3'- -CCGGU-GG-GCUCAU-----------UGGGUa------AGaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 73068 0.66 0.989993
Target:  5'- gGGCCACgacgaCGGGggcGCCCAgaagCgUCGCc -3'
miRNA:   3'- -CCGGUGg----GCUCau-UGGGUaa--GaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 8117 0.66 0.98306
Target:  5'- cGGCCcggaaccccgaaaaGCCuCGGGggGCCCAUUUcggcccgCGCg -3'
miRNA:   3'- -CCGG--------------UGG-GCUCauUGGGUAAGaa-----GCG- -5'
21511 3' -52.2 NC_004812.1 + 60504 0.66 0.989993
Target:  5'- cGGCCACgCaGGUGGCCCcgaacggCU-CGCc -3'
miRNA:   3'- -CCGGUGgGcUCAUUGGGuaa----GAaGCG- -5'
21511 3' -52.2 NC_004812.1 + 12940 0.66 0.983638
Target:  5'- cGUCGCCCGAGcc-CCCAgcgUCUUgaagucgaacggCGCu -3'
miRNA:   3'- cCGGUGGGCUCauuGGGUa--AGAA------------GCG- -5'
21511 3' -52.2 NC_004812.1 + 23784 0.66 0.988624
Target:  5'- cGGCCAUCCGAcgcGUGcgcgGCuCCAUgcgCgccgCGCg -3'
miRNA:   3'- -CCGGUGGGCU---CAU----UG-GGUAa--Gaa--GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.