miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 200 0.73 0.764729
Target:  5'- cGCCGCCgGGGgagGGCCCGgg--UCGCg -3'
miRNA:   3'- cCGGUGGgCUCa--UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 1108 0.73 0.792975
Target:  5'- cGGCgGCCCGGGUcgcuucgccggGGCCCA----UCGCa -3'
miRNA:   3'- -CCGgUGGGCUCA-----------UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 1375 0.69 0.946651
Target:  5'- cGGcCCGCCCucGcgcaccaaGGCCCGcUCUUCGCg -3'
miRNA:   3'- -CC-GGUGGGcuCa-------UUGGGUaAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 1575 0.67 0.981653
Target:  5'- aGCCGCCCGGGUccCCCc-----CGCa -3'
miRNA:   3'- cCGGUGGGCUCAuuGGGuaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 2910 0.7 0.909764
Target:  5'- uGGaCCGCCCGGGggagcccGCCCcgUCcUCGg -3'
miRNA:   3'- -CC-GGUGGGCUCau-----UGGGuaAGaAGCg -5'
21511 3' -52.2 NC_004812.1 + 3271 0.71 0.857986
Target:  5'- cGCCGCCCGAGgagacgccgcccgGGCCCAccg--CGCg -3'
miRNA:   3'- cCGGUGGGCUCa------------UUGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 3448 0.7 0.909764
Target:  5'- aGCCGCCgCGGGggucgGGCCCGgcgggCggUCGCg -3'
miRNA:   3'- cCGGUGG-GCUCa----UUGGGUaa---Ga-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 3909 0.67 0.971881
Target:  5'- aGGCCGCCCccgccacgcGAG-GGCCCAagCggcccUCGCu -3'
miRNA:   3'- -CCGGUGGG---------CUCaUUGGGUaaGa----AGCG- -5'
21511 3' -52.2 NC_004812.1 + 4397 0.69 0.927046
Target:  5'- cGUCGCCCGGGUGGuCCCGccgcacUCGCc -3'
miRNA:   3'- cCGGUGGGCUCAUU-GGGUaaga--AGCG- -5'
21511 3' -52.2 NC_004812.1 + 4455 0.68 0.968942
Target:  5'- -cCCGCCCGAGUAcCCCGgcgacccCGCc -3'
miRNA:   3'- ccGGUGGGCUCAUuGGGUaagaa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 5627 0.7 0.921531
Target:  5'- aGGCgGCUCGGGggccgGGCCCGggg-UCGCc -3'
miRNA:   3'- -CCGgUGGGCUCa----UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 6025 0.66 0.983638
Target:  5'- cGCCGCCCcgucGAGgaGCCCGccgCcgCGCg -3'
miRNA:   3'- cCGGUGGG----CUCauUGGGUaa-GaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 6192 0.67 0.981653
Target:  5'- cGGagGCCCGGGgcGCCCGgcggccCGCg -3'
miRNA:   3'- -CCggUGGGCUCauUGGGUaagaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 8117 0.66 0.98306
Target:  5'- cGGCCcggaaccccgaaaaGCCuCGGGggGCCCAUUUcggcccgCGCg -3'
miRNA:   3'- -CCGG--------------UGG-GCUCauUGGGUAAGaa-----GCG- -5'
21511 3' -52.2 NC_004812.1 + 8393 0.66 0.983638
Target:  5'- cGGCCACCCaAGcGGCCCccc---CGCa -3'
miRNA:   3'- -CCGGUGGGcUCaUUGGGuaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 8505 0.74 0.755059
Target:  5'- cGGCCGCCCGAGccggcugccuuuUAuCCCggUCgcCGCg -3'
miRNA:   3'- -CCGGUGGGCUC------------AUuGGGuaAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 9127 0.67 0.974615
Target:  5'- cGCCGCCCgucGAGUAcguuAUCCGgagCgUCGCg -3'
miRNA:   3'- cCGGUGGG---CUCAU----UGGGUaa-GaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 9781 0.67 0.981653
Target:  5'- cGGCCGCgCGGGUGuCCCGcgggagugacCUUCGa -3'
miRNA:   3'- -CCGGUGgGCUCAUuGGGUaa--------GAAGCg -5'
21511 3' -52.2 NC_004812.1 + 10645 0.68 0.967077
Target:  5'- cGGCCcccaGCCCGAGgguGCCCcgcacccagCGCa -3'
miRNA:   3'- -CCGG----UGGGCUCau-UGGGuaagaa---GCG- -5'
21511 3' -52.2 NC_004812.1 + 10668 0.69 0.945316
Target:  5'- cGGCCGcCCCGAcaGACCagacucgcucguguCAUgUCUUCGCu -3'
miRNA:   3'- -CCGGU-GGGCUcaUUGG--------------GUA-AGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.