miRNA display CGI


Results 1 - 20 of 214 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 52144 1.14 0.003634
Target:  5'- cGGCCACCCGAGUAACCCAUUCUUCGCc -3'
miRNA:   3'- -CCGGUGGGCUCAUUGGGUAAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 138394 0.78 0.52043
Target:  5'- cGCCGCCCGGGUGGCCUAcUac-CGCg -3'
miRNA:   3'- cCGGUGGGCUCAUUGGGUaAgaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 114828 0.78 0.530416
Target:  5'- uGGCCGCCCGAGcGGCCgAggCgcggCGCg -3'
miRNA:   3'- -CCGGUGGGCUCaUUGGgUaaGaa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 50098 0.77 0.550589
Target:  5'- uGGCCGugguggacgaccCCCGGG-GGCCC-UUCUUCGCg -3'
miRNA:   3'- -CCGGU------------GGGCUCaUUGGGuAAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 58237 0.77 0.581262
Target:  5'- cGCCGCCCGAG-GACCCGUacCUggCGCc -3'
miRNA:   3'- cCGGUGGGCUCaUUGGGUAa-GAa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 98969 0.77 0.60191
Target:  5'- aGGCUGCCCGAggcccagaugacGUAGCCCGUcagggUCGCg -3'
miRNA:   3'- -CCGGUGGGCU------------CAUUGGGUAaga--AGCG- -5'
21511 3' -52.2 NC_004812.1 + 82566 0.76 0.612273
Target:  5'- uGCCGCCCGAGggGCUCgAUUCcaCGCa -3'
miRNA:   3'- cCGGUGGGCUCauUGGG-UAAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 83952 0.75 0.695028
Target:  5'- gGGCuCGCCgCgGAGggaGACCCcUUCUUCGCg -3'
miRNA:   3'- -CCG-GUGG-G-CUCa--UUGGGuAAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 58102 0.75 0.695028
Target:  5'- gGGCCGCCCGGG--ACCCGgcgCccCGCg -3'
miRNA:   3'- -CCGGUGGGCUCauUGGGUaa-GaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 138785 0.74 0.715356
Target:  5'- cGGCCGCCUGGGUcguggccgcgAACCCccUCUUUGa -3'
miRNA:   3'- -CCGGUGGGCUCA----------UUGGGuaAGAAGCg -5'
21511 3' -52.2 NC_004812.1 + 108532 0.74 0.735392
Target:  5'- cGGCCG-CCGAGUAcgcGCCCGgcgagUCGCu -3'
miRNA:   3'- -CCGGUgGGCUCAU---UGGGUaaga-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 21778 0.74 0.745277
Target:  5'- cGCCAcccCCCGGGgcGCgCCAUUCgcCGCg -3'
miRNA:   3'- cCGGU---GGGCUCauUG-GGUAAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 39406 0.74 0.755059
Target:  5'- cGGCCGCCCGAGccggcugccuuuUAuCCCggUCgcCGCg -3'
miRNA:   3'- -CCGGUGGGCUC------------AUuGGGuaAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 147510 0.74 0.755059
Target:  5'- cGGUgGcCCCGAGgcGCCg--UCUUCGCg -3'
miRNA:   3'- -CCGgU-GGGCUCauUGGguaAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 8505 0.74 0.755059
Target:  5'- cGGCCGCCCGAGccggcugccuuuUAuCCCggUCgcCGCg -3'
miRNA:   3'- -CCGGUGGGCUC------------AUuGGGuaAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 125709 0.73 0.764729
Target:  5'- cGCCGCCgGGGgagGGCCCGgg--UCGCg -3'
miRNA:   3'- cCGGUGGgCUCa--UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 200 0.73 0.764729
Target:  5'- cGCCGCCgGGGgagGGCCCGgg--UCGCg -3'
miRNA:   3'- cCGGUGGgCUCa--UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 32009 0.73 0.792975
Target:  5'- cGGCgGCCCGGGUcgcuucgccggGGCCCA----UCGCa -3'
miRNA:   3'- -CCGgUGGGCUCA-----------UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 1108 0.73 0.792975
Target:  5'- cGGCgGCCCGGGUcgcuucgccggGGCCCA----UCGCa -3'
miRNA:   3'- -CCGgUGGGCUCA-----------UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 44302 0.73 0.793895
Target:  5'- aGCCGCCCGAGgcgcgacucgagcucGGCCCGggCgggCGCg -3'
miRNA:   3'- cCGGUGGGCUCa--------------UUGGGUaaGaa-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.