miRNA display CGI


Results 1 - 20 of 214 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 3' -52.2 NC_004812.1 + 49796 0.71 0.890298
Target:  5'- gGGCCcuCCCGcGggGCCCAgUCggCGCg -3'
miRNA:   3'- -CCGGu-GGGCuCauUGGGUaAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 137126 0.72 0.828505
Target:  5'- aGCCAcCCCGAGUAucCCCAgcgggUCGUg -3'
miRNA:   3'- cCGGU-GGGCUCAUu-GGGUaaga-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 39216 0.72 0.836948
Target:  5'- cGGCCACCaGcGUGGCCCGggCcaCGCg -3'
miRNA:   3'- -CCGGUGGgCuCAUUGGGUaaGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 37597 0.72 0.8452
Target:  5'- uGGCCGCCCGcGUucACCCGgcagUCccggugCGCg -3'
miRNA:   3'- -CCGGUGGGCuCAu-UGGGUa---AGaa----GCG- -5'
21511 3' -52.2 NC_004812.1 + 47782 0.72 0.8452
Target:  5'- cGCgGCCCGAGUGACCggagggCGUgcgUCGCc -3'
miRNA:   3'- cCGgUGGGCUCAUUGG------GUAagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 3271 0.71 0.857986
Target:  5'- cGCCGCCCGAGgagacgccgcccgGGCCCAccg--CGCg -3'
miRNA:   3'- cCGGUGGGCUCa------------UUGGGUaagaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 23827 0.71 0.861099
Target:  5'- cGGCgACCCGGGgccGGCCCGgccCggCGCc -3'
miRNA:   3'- -CCGgUGGGCUCa--UUGGGUaa-GaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 135496 0.71 0.876147
Target:  5'- cGGCCGCCUggcuGGGUGcgGCUCugucggcgUCUUCGCc -3'
miRNA:   3'- -CCGGUGGG----CUCAU--UGGGua------AGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 88162 0.71 0.883337
Target:  5'- cGGCCACcaCCGGG-AGCCC---CUUCGUg -3'
miRNA:   3'- -CCGGUG--GGCUCaUUGGGuaaGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 121105 0.72 0.819877
Target:  5'- gGGCCACCCGAGc--CCCGgg--UCGg -3'
miRNA:   3'- -CCGGUGGGCUCauuGGGUaagaAGCg -5'
21511 3' -52.2 NC_004812.1 + 44302 0.73 0.793895
Target:  5'- aGCCGCCCGAGgcgcgacucgagcucGGCCCGggCgggCGCg -3'
miRNA:   3'- cCGGUGGGCUCa--------------UUGGGUaaGaa-GCG- -5'
21511 3' -52.2 NC_004812.1 + 1108 0.73 0.792975
Target:  5'- cGGCgGCCCGGGUcgcuucgccggGGCCCA----UCGCa -3'
miRNA:   3'- -CCGgUGGGCUCA-----------UUGGGUaagaAGCG- -5'
21511 3' -52.2 NC_004812.1 + 114828 0.78 0.530416
Target:  5'- uGGCCGCCCGAGcGGCCgAggCgcggCGCg -3'
miRNA:   3'- -CCGGUGGGCUCaUUGGgUaaGaa--GCG- -5'
21511 3' -52.2 NC_004812.1 + 50098 0.77 0.550589
Target:  5'- uGGCCGugguggacgaccCCCGGG-GGCCC-UUCUUCGCg -3'
miRNA:   3'- -CCGGU------------GGGCUCaUUGGGuAAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 98969 0.77 0.60191
Target:  5'- aGGCUGCCCGAggcccagaugacGUAGCCCGUcagggUCGCg -3'
miRNA:   3'- -CCGGUGGGCU------------CAUUGGGUAaga--AGCG- -5'
21511 3' -52.2 NC_004812.1 + 138785 0.74 0.715356
Target:  5'- cGGCCGCCUGGGUcguggccgcgAACCCccUCUUUGa -3'
miRNA:   3'- -CCGGUGGGCUCA----------UUGGGuaAGAAGCg -5'
21511 3' -52.2 NC_004812.1 + 108532 0.74 0.735392
Target:  5'- cGGCCG-CCGAGUAcgcGCCCGgcgagUCGCu -3'
miRNA:   3'- -CCGGUgGGCUCAU---UGGGUaaga-AGCG- -5'
21511 3' -52.2 NC_004812.1 + 8505 0.74 0.755059
Target:  5'- cGGCCGCCCGAGccggcugccuuuUAuCCCggUCgcCGCg -3'
miRNA:   3'- -CCGGUGGGCUC------------AUuGGGuaAGaaGCG- -5'
21511 3' -52.2 NC_004812.1 + 147510 0.74 0.755059
Target:  5'- cGGUgGcCCCGAGgcGCCg--UCUUCGCg -3'
miRNA:   3'- -CCGgU-GGGCUCauUGGguaAGAAGCG- -5'
21511 3' -52.2 NC_004812.1 + 125709 0.73 0.764729
Target:  5'- cGCCGCCgGGGgagGGCCCGgg--UCGCg -3'
miRNA:   3'- cCGGUGGgCUCa--UUGGGUaagaAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.