miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 5' -42.7 NC_004812.1 + 50476 0.75 0.997429
Target:  5'- uCGGCGGGcgCGuGUGGACGC-CGGGCg -3'
miRNA:   3'- -GCUGCUCuaGUuUAUUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 52179 1.14 0.039055
Target:  5'- gCGACGAGAUCAAAUAAACACUCGAACg -3'
miRNA:   3'- -GCUGCUCUAGUUUAUUUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 57632 0.7 0.999991
Target:  5'- uGACGGGcuacGUCAucUGGGC-CUCGGGCa -3'
miRNA:   3'- gCUGCUC----UAGUuuAUUUGuGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 60177 0.68 0.999999
Target:  5'- uCGGCGGcucGUCAAagacggccauggacAUGAGCgACUCGAGCg -3'
miRNA:   3'- -GCUGCUc--UAGUU--------------UAUUUG-UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 60736 0.69 0.999996
Target:  5'- cCGcuCGGGGUCGAGaccgAGGCGCUCGcACa -3'
miRNA:   3'- -GCu-GCUCUAGUUUa---UUUGUGAGCuUG- -5'
21511 5' -42.7 NC_004812.1 + 61544 0.68 0.999999
Target:  5'- aCGGCGGcGGUCGcGUAGcCGCUCGcGCc -3'
miRNA:   3'- -GCUGCU-CUAGUuUAUUuGUGAGCuUG- -5'
21511 5' -42.7 NC_004812.1 + 61892 0.66 1
Target:  5'- uGGCGAGGgggaucCAGAUGu--GCUCGGGCc -3'
miRNA:   3'- gCUGCUCUa-----GUUUAUuugUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 63692 0.66 1
Target:  5'- gCGACaAGGUCAA----GCuCUCGAGCu -3'
miRNA:   3'- -GCUGcUCUAGUUuauuUGuGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 65622 0.71 0.999966
Target:  5'- cCGACGAcGA-CGAGgcguCGCUCGAGCc -3'
miRNA:   3'- -GCUGCU-CUaGUUUauuuGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 66495 0.72 0.999891
Target:  5'- cCGGCGccugGGAUCGGAUGAACccgauCUCGAu- -3'
miRNA:   3'- -GCUGC----UCUAGUUUAUUUGu----GAGCUug -5'
21511 5' -42.7 NC_004812.1 + 66719 0.67 1
Target:  5'- gCGGCGAagaagaugcccucGAUCAggaucaucagGAUGAACuuCUCGGGCa -3'
miRNA:   3'- -GCUGCU-------------CUAGU----------UUAUUUGu-GAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 67862 0.66 1
Target:  5'- cCGugGAuGUCGuuGAUGGucaGCUCGAACc -3'
miRNA:   3'- -GCugCUcUAGU--UUAUUug-UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 69316 0.72 0.999813
Target:  5'- uCGACGAGAUCAAGgcccgcgucGGC-CUCGAc- -3'
miRNA:   3'- -GCUGCUCUAGUUUau-------UUGuGAGCUug -5'
21511 5' -42.7 NC_004812.1 + 70375 0.66 1
Target:  5'- gGGCGGGAUagggccaAGGCGC-CGAACg -3'
miRNA:   3'- gCUGCUCUAguuua--UUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 72254 0.7 0.999994
Target:  5'- uCGGCGGGcgCGAGacUGGACcgccgGCUCGGAUg -3'
miRNA:   3'- -GCUGCUCuaGUUU--AUUUG-----UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 72313 0.69 0.999998
Target:  5'- gGACG-GAUCGAucGGGCGCggcCGGGCg -3'
miRNA:   3'- gCUGCuCUAGUUuaUUUGUGa--GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 74482 0.74 0.998196
Target:  5'- -cACGGGGUCAGGUccucggcGAGCGCgUCGAACu -3'
miRNA:   3'- gcUGCUCUAGUUUA-------UUUGUG-AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 74845 0.68 1
Target:  5'- aCGAUGAGAUggCGGA-GAACA-UCGAGCa -3'
miRNA:   3'- -GCUGCUCUA--GUUUaUUUGUgAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 75346 0.68 0.999999
Target:  5'- cCGGCGccuGGUCcac---GCGCUCGAGCg -3'
miRNA:   3'- -GCUGCu--CUAGuuuauuUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 77242 0.72 0.999813
Target:  5'- gCGuCGAGggCcucgAAGCGCUCGAGCu -3'
miRNA:   3'- -GCuGCUCuaGuuuaUUUGUGAGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.