miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 5' -42.7 NC_004812.1 + 11677 0.67 1
Target:  5'- cCGGCGAGc-------GGCACUCGGGCa -3'
miRNA:   3'- -GCUGCUCuaguuuauUUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 12915 0.69 0.999999
Target:  5'- gGGCG-GcgCGgc-GAGCGCUCGAGCg -3'
miRNA:   3'- gCUGCuCuaGUuuaUUUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 13107 0.66 1
Target:  5'- cCGACGgcGGAggCGuGUAGAUgcgGCUCGGGCg -3'
miRNA:   3'- -GCUGC--UCUa-GUuUAUUUG---UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 14085 0.66 1
Target:  5'- aCGACGAuGuugcugCGGGUGAACGCgggGAGCg -3'
miRNA:   3'- -GCUGCU-Cua----GUUUAUUUGUGag-CUUG- -5'
21511 5' -42.7 NC_004812.1 + 15507 0.66 1
Target:  5'- gCGAUGAGGggGAggAGACGacgccgccuCUCGAGCg -3'
miRNA:   3'- -GCUGCUCUagUUuaUUUGU---------GAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 17784 0.66 1
Target:  5'- gGGCGAGAaCGGGgugGGugcgcGCACaUCGAACa -3'
miRNA:   3'- gCUGCUCUaGUUUa--UU-----UGUG-AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 18488 0.66 1
Target:  5'- gGACGAGGggCGGAgGGGCG-UCGAGCc -3'
miRNA:   3'- gCUGCUCUa-GUUUaUUUGUgAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 20148 0.68 1
Target:  5'- cCGGcCGGGAgcUCGAucggcGGCGCUCGGGCc -3'
miRNA:   3'- -GCU-GCUCU--AGUUuau--UUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 20280 0.66 1
Target:  5'- gGACGAGGUCGggGGUGggcGGCGCgccggCGcAGCg -3'
miRNA:   3'- gCUGCUCUAGU--UUAU---UUGUGa----GC-UUG- -5'
21511 5' -42.7 NC_004812.1 + 22171 0.66 1
Target:  5'- gCGGCGccgugcGGAUCGGcgGAGCGC-CGGAg -3'
miRNA:   3'- -GCUGC------UCUAGUUuaUUUGUGaGCUUg -5'
21511 5' -42.7 NC_004812.1 + 23376 0.68 1
Target:  5'- aCGACGGGcgCGGAUcccGGCGggCGAGCg -3'
miRNA:   3'- -GCUGCUCuaGUUUAu--UUGUgaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 23877 0.66 1
Target:  5'- --cCGAGGUCAAGU--ACGCcggggagUCGGACg -3'
miRNA:   3'- gcuGCUCUAGUUUAuuUGUG-------AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 25313 0.77 0.986027
Target:  5'- -aGCGGGGUCGAGgagGAACGCcgCGAGCg -3'
miRNA:   3'- gcUGCUCUAGUUUa--UUUGUGa-GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 27662 0.66 1
Target:  5'- gGGCGGGGUUcaccugAAACAC-CGGGCu -3'
miRNA:   3'- gCUGCUCUAGuuua--UUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 29949 0.76 0.994047
Target:  5'- aCGACGGcGUCGAcgGGGCGCgCGAACa -3'
miRNA:   3'- -GCUGCUcUAGUUuaUUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 37981 0.68 1
Target:  5'- cCGACuGGAUCAGAUAGAacgccgugggguagcCGCgguccUCGAACg -3'
miRNA:   3'- -GCUGcUCUAGUUUAUUU---------------GUG-----AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 39542 0.67 1
Target:  5'- uCGACGGGGUgCGggccgucgcgggcGAUGAGCGgcuggugcacCUCGAACu -3'
miRNA:   3'- -GCUGCUCUA-GU-------------UUAUUUGU----------GAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 44442 0.71 0.999966
Target:  5'- -cACGAGGUCGGAgaggcgGAGCAUgccgCGGGCg -3'
miRNA:   3'- gcUGCUCUAGUUUa-----UUUGUGa---GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 48258 0.68 0.999999
Target:  5'- gCGGCGAcGUCGuccgcGCGCUCGAAg -3'
miRNA:   3'- -GCUGCUcUAGUuuauuUGUGAGCUUg -5'
21511 5' -42.7 NC_004812.1 + 49738 0.66 1
Target:  5'- cCGACGGGGUCGGGgu--CGCggCGGGg -3'
miRNA:   3'- -GCUGCUCUAGUUUauuuGUGa-GCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.