miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 5' -42.7 NC_004812.1 + 75346 0.68 0.999999
Target:  5'- cCGGCGccuGGUCcac---GCGCUCGAGCg -3'
miRNA:   3'- -GCUGCu--CUAGuuuauuUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 146773 0.7 0.999976
Target:  5'- aGGCGAGAUgGAAguuUGAACgGC-CGAACa -3'
miRNA:   3'- gCUGCUCUAgUUU---AUUUG-UGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 72254 0.7 0.999994
Target:  5'- uCGGCGGGcgCGAGacUGGACcgccgGCUCGGAUg -3'
miRNA:   3'- -GCUGCUCuaGUUU--AUUUG-----UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 108290 0.7 0.999994
Target:  5'- gGGCGGGGUCGGGcaccACGCcCGAGCc -3'
miRNA:   3'- gCUGCUCUAGUUUauu-UGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 60736 0.69 0.999996
Target:  5'- cCGcuCGGGGUCGAGaccgAGGCGCUCGcACa -3'
miRNA:   3'- -GCu-GCUCUAGUUUa---UUUGUGAGCuUG- -5'
21511 5' -42.7 NC_004812.1 + 72313 0.69 0.999998
Target:  5'- gGACG-GAUCGAucGGGCGCggcCGGGCg -3'
miRNA:   3'- gCUGCuCUAGUUuaUUUGUGa--GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 106740 0.69 0.999999
Target:  5'- gCGACGAGGccuacuacgUCAug-GGGCGCUCGucGCu -3'
miRNA:   3'- -GCUGCUCU---------AGUuuaUUUGUGAGCu-UG- -5'
21511 5' -42.7 NC_004812.1 + 90469 0.68 0.999999
Target:  5'- aCGACGAGGUCA----GACAgaaGAGCg -3'
miRNA:   3'- -GCUGCUCUAGUuuauUUGUgagCUUG- -5'
21511 5' -42.7 NC_004812.1 + 60177 0.68 0.999999
Target:  5'- uCGGCGGcucGUCAAagacggccauggacAUGAGCgACUCGAGCg -3'
miRNA:   3'- -GCUGCUc--UAGUU--------------UAUUUG-UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 44442 0.71 0.999966
Target:  5'- -cACGAGGUCGGAgaggcgGAGCAUgccgCGGGCg -3'
miRNA:   3'- gcUGCUCUAGUUUa-----UUUGUGa---GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 94034 0.72 0.999891
Target:  5'- gCGAUGGGGUCGGGUGugaagGACGC-CGAGg -3'
miRNA:   3'- -GCUGCUCUAGUUUAU-----UUGUGaGCUUg -5'
21511 5' -42.7 NC_004812.1 + 104572 0.72 0.999891
Target:  5'- gGGCGAGAUCAGcucGUuGGCGCgcgGAACg -3'
miRNA:   3'- gCUGCUCUAGUU---UAuUUGUGag-CUUG- -5'
21511 5' -42.7 NC_004812.1 + 150821 0.77 0.986027
Target:  5'- -aGCGGGGUCGAGgagGAACGCcgCGAGCg -3'
miRNA:   3'- gcUGCUCUAGUUUa--UUUGUGa-GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 29949 0.76 0.994047
Target:  5'- aCGACGGcGUCGAcgGGGCGCgCGAACa -3'
miRNA:   3'- -GCUGCUcUAGUUuaUUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 50476 0.75 0.997429
Target:  5'- uCGGCGGGcgCGuGUGGACGC-CGGGCg -3'
miRNA:   3'- -GCUGCUCuaGUuUAUUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 74482 0.74 0.998196
Target:  5'- -cACGGGGUCAGGUccucggcGAGCGCgUCGAACu -3'
miRNA:   3'- gcUGCUCUAGUUUA-------UUUGUG-AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 82951 0.74 0.999219
Target:  5'- aUGGCGGGGUCGAucucccGGACgguguGCUCGAACu -3'
miRNA:   3'- -GCUGCUCUAGUUua----UUUG-----UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 77242 0.72 0.999813
Target:  5'- gCGuCGAGggCcucgAAGCGCUCGAGCu -3'
miRNA:   3'- -GCuGCUCuaGuuuaUUUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 69316 0.72 0.999813
Target:  5'- uCGACGAGAUCAAGgcccgcgucGGC-CUCGAc- -3'
miRNA:   3'- -GCUGCUCUAGUUUau-------UUGuGAGCUug -5'
21511 5' -42.7 NC_004812.1 + 103219 0.72 0.999891
Target:  5'- gGACGAGcggCAGGUucAGGCGCUCGcgGACg -3'
miRNA:   3'- gCUGCUCua-GUUUA--UUUGUGAGC--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.