Results 1 - 20 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21511 | 5' | -42.7 | NC_004812.1 | + | 141747 | 0.66 | 1 |
Target: 5'- gGugGAGGUCAcgcAGUu--CAUcuUCGAGCa -3' miRNA: 3'- gCugCUCUAGU---UUAuuuGUG--AGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 125108 | 0.66 | 1 |
Target: 5'- gCGGCG-GAUCGGGUccGCGCUaccgGAGCc -3' miRNA: 3'- -GCUGCuCUAGUUUAuuUGUGAg---CUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 27662 | 0.66 | 1 |
Target: 5'- gGGCGGGGUUcaccugAAACAC-CGGGCu -3' miRNA: 3'- gCUGCUCUAGuuua--UUUGUGaGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 17784 | 0.66 | 1 |
Target: 5'- gGGCGAGAaCGGGgugGGugcgcGCACaUCGAACa -3' miRNA: 3'- gCUGCUCUaGUUUa--UU-----UGUG-AGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 49738 | 0.66 | 1 |
Target: 5'- cCGACGGGGUCGGGgu--CGCggCGGGg -3' miRNA: 3'- -GCUGCUCUAGUUUauuuGUGa-GCUUg -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 121775 | 0.66 | 1 |
Target: 5'- aGGCGGGggCAGcgAGGgcCGCUUGGGCc -3' miRNA: 3'- gCUGCUCuaGUUuaUUU--GUGAGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 141026 | 0.66 | 1 |
Target: 5'- cCGACGAcGAUCGGuccGGCGCgcgauucccgCGGACg -3' miRNA: 3'- -GCUGCU-CUAGUUuauUUGUGa---------GCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 81603 | 0.66 | 1 |
Target: 5'- gCGACGAGGUCGGc-GAGCACgccccuggccgccaGGGCg -3' miRNA: 3'- -GCUGCUCUAGUUuaUUUGUGag------------CUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 23877 | 0.66 | 1 |
Target: 5'- --cCGAGGUCAAGU--ACGCcggggagUCGGACg -3' miRNA: 3'- gcuGCUCUAGUUUAuuUGUG-------AGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 20280 | 0.66 | 1 |
Target: 5'- gGACGAGGUCGggGGUGggcGGCGCgccggCGcAGCg -3' miRNA: 3'- gCUGCUCUAGU--UUAU---UUGUGa----GC-UUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 84125 | 0.66 | 1 |
Target: 5'- cCGGCGGGA-Cu--UAGACACcggagUCGGGCg -3' miRNA: 3'- -GCUGCUCUaGuuuAUUUGUG-----AGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 63692 | 0.66 | 1 |
Target: 5'- gCGACaAGGUCAA----GCuCUCGAGCu -3' miRNA: 3'- -GCUGcUCUAGUUuauuUGuGAGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 78427 | 0.66 | 1 |
Target: 5'- gGGCGuugauGGUCAGccgcGAGCACUCGGu- -3' miRNA: 3'- gCUGCu----CUAGUUua--UUUGUGAGCUug -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 95559 | 0.66 | 1 |
Target: 5'- cCGGCGGGGUCGAGcgggcUAAccGCACggccgcgcccgcgcgCGGGCg -3' miRNA: 3'- -GCUGCUCUAGUUU-----AUU--UGUGa--------------GCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 115352 | 0.66 | 1 |
Target: 5'- -aGCGGGggCGGGcAAACAC-CGAACg -3' miRNA: 3'- gcUGCUCuaGUUUaUUUGUGaGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 15507 | 0.66 | 1 |
Target: 5'- gCGAUGAGGggGAggAGACGacgccgccuCUCGAGCg -3' miRNA: 3'- -GCUGCUCUagUUuaUUUGU---------GAGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 108853 | 0.66 | 1 |
Target: 5'- aGACGGGAacgCAGAaGAGCGCcgCGAu- -3' miRNA: 3'- gCUGCUCUa--GUUUaUUUGUGa-GCUug -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 89688 | 0.66 | 1 |
Target: 5'- aCGugGAGcaggaggccAUCGAGgugguGCACUCGcGCg -3' miRNA: 3'- -GCugCUC---------UAGUUUauu--UGUGAGCuUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 18488 | 0.66 | 1 |
Target: 5'- gGACGAGGggCGGAgGGGCG-UCGAGCc -3' miRNA: 3'- gCUGCUCUa-GUUUaUUUGUgAGCUUG- -5' |
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21511 | 5' | -42.7 | NC_004812.1 | + | 67862 | 0.66 | 1 |
Target: 5'- cCGugGAuGUCGuuGAUGGucaGCUCGAACc -3' miRNA: 3'- -GCugCUcUAGU--UUAUUug-UGAGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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