miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21511 5' -42.7 NC_004812.1 + 52179 1.14 0.039055
Target:  5'- gCGACGAGAUCAAAUAAACACUCGAACg -3'
miRNA:   3'- -GCUGCUCUAGUUUAUUUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 109740 0.83 0.864595
Target:  5'- gCGACGAGAUCGAGUAcgUGCcCGAGCc -3'
miRNA:   3'- -GCUGCUCUAGUUUAUuuGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 121250 0.79 0.971549
Target:  5'- gGGCGGGGUCGccgGggUACUCGGGCg -3'
miRNA:   3'- gCUGCUCUAGUuuaUuuGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 152151 0.79 0.971549
Target:  5'- gGGCGGGGUCGccgGggUACUCGGGCg -3'
miRNA:   3'- gCUGCUCUAGUuuaUuuGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 25313 0.77 0.986027
Target:  5'- -aGCGGGGUCGAGgagGAACGCcgCGAGCg -3'
miRNA:   3'- gcUGCUCUAGUUUa--UUUGUGa-GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 150821 0.77 0.986027
Target:  5'- -aGCGGGGUCGAGgagGAACGCcgCGAGCg -3'
miRNA:   3'- gcUGCUCUAGUUUa--UUUGUGa-GCUUG- -5'
21511 5' -42.7 NC_004812.1 + 29949 0.76 0.994047
Target:  5'- aCGACGGcGUCGAcgGGGCGCgCGAACa -3'
miRNA:   3'- -GCUGCUcUAGUUuaUUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 50476 0.75 0.997429
Target:  5'- uCGGCGGGcgCGuGUGGACGC-CGGGCg -3'
miRNA:   3'- -GCUGCUCuaGUuUAUUUGUGaGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 146966 0.75 0.997429
Target:  5'- gGGCGGGGUgGgAGUGGGCGCUgGGGCg -3'
miRNA:   3'- gCUGCUCUAgU-UUAUUUGUGAgCUUG- -5'
21511 5' -42.7 NC_004812.1 + 74482 0.74 0.998196
Target:  5'- -cACGGGGUCAGGUccucggcGAGCGCgUCGAACu -3'
miRNA:   3'- gcUGCUCUAGUUUA-------UUUGUG-AGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 82951 0.74 0.999219
Target:  5'- aUGGCGGGGUCGAucucccGGACgguguGCUCGAACu -3'
miRNA:   3'- -GCUGCUCUAGUUua----UUUG-----UGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 77242 0.72 0.999813
Target:  5'- gCGuCGAGggCcucgAAGCGCUCGAGCu -3'
miRNA:   3'- -GCuGCUCuaGuuuaUUUGUGAGCUUG- -5'
21511 5' -42.7 NC_004812.1 + 69316 0.72 0.999813
Target:  5'- uCGACGAGAUCAAGgcccgcgucGGC-CUCGAc- -3'
miRNA:   3'- -GCUGCUCUAGUUUau-------UUGuGAGCUug -5'
21511 5' -42.7 NC_004812.1 + 134405 0.72 0.999813
Target:  5'- gGACGAGGUCAuGUcGACcCUgGGGCa -3'
miRNA:   3'- gCUGCUCUAGUuUAuUUGuGAgCUUG- -5'
21511 5' -42.7 NC_004812.1 + 66495 0.72 0.999891
Target:  5'- cCGGCGccugGGAUCGGAUGAACccgauCUCGAu- -3'
miRNA:   3'- -GCUGC----UCUAGUUUAUUUGu----GAGCUug -5'
21511 5' -42.7 NC_004812.1 + 104572 0.72 0.999891
Target:  5'- gGGCGAGAUCAGcucGUuGGCGCgcgGAACg -3'
miRNA:   3'- gCUGCUCUAGUU---UAuUUGUGag-CUUG- -5'
21511 5' -42.7 NC_004812.1 + 103219 0.72 0.999891
Target:  5'- gGACGAGcggCAGGUucAGGCGCUCGcgGACg -3'
miRNA:   3'- gCUGCUCua-GUUUA--UUUGUGAGC--UUG- -5'
21511 5' -42.7 NC_004812.1 + 94034 0.72 0.999891
Target:  5'- gCGAUGGGGUCGGGUGugaagGACGC-CGAGg -3'
miRNA:   3'- -GCUGCUCUAGUUUAU-----UUGUGaGCUUg -5'
21511 5' -42.7 NC_004812.1 + 78019 0.71 0.999918
Target:  5'- cCGACGAGGcaaccCAGA-AGGCGCUCGAcGCg -3'
miRNA:   3'- -GCUGCUCUa----GUUUaUUUGUGAGCU-UG- -5'
21511 5' -42.7 NC_004812.1 + 81794 0.71 0.999954
Target:  5'- gGACGAGGU---GUGGGCGCgguUCGGGCg -3'
miRNA:   3'- gCUGCUCUAguuUAUUUGUG---AGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.