miRNA display CGI


Results 21 - 40 of 167 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 56879 0.66 0.908667
Target:  5'- gGUcAGaACGCCCGGgccuGUG-CGGCCa -3'
miRNA:   3'- aUAuUC-UGCGGGCCac--UACuGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 5348 0.66 0.908667
Target:  5'- --gGGGAgGCCCGG-GAgaGGCGGCa- -3'
miRNA:   3'- auaUUCUgCGGGCCaCUa-CUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 148450 0.66 0.908667
Target:  5'- cAUGGGGgGCCCcaGGUGAgcgcGCgGGCCGa -3'
miRNA:   3'- aUAUUCUgCGGG--CCACUac--UG-CCGGC- -5'
21512 3' -55.5 NC_004812.1 + 35545 0.66 0.914645
Target:  5'- --cGGGACGCCCGcGcGggGAggggcucgcCGGCCGu -3'
miRNA:   3'- auaUUCUGCGGGC-CaCuaCU---------GCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 55325 0.66 0.908667
Target:  5'- ----cGACGCCCGGgcgucgGAgcugcGGCGGCa- -3'
miRNA:   3'- auauuCUGCGGGCCa-----CUa----CUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 4030 0.66 0.914645
Target:  5'- cGUGAGGCaCUCGGcggcGgcGGCGGCCGc -3'
miRNA:   3'- aUAUUCUGcGGGCCa---CuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 71038 0.66 0.931142
Target:  5'- --gGAGcCGCUgGG-GAgGGCGGCCGc -3'
miRNA:   3'- auaUUCuGCGGgCCaCUaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 105495 0.66 0.931142
Target:  5'- ---cAGGCGaCCGGgcccGGCGGCCGa -3'
miRNA:   3'- auauUCUGCgGGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 105674 0.66 0.90621
Target:  5'- gGUGGGGCGCguacgCCGGggccccgaaggcgGGUGGCggGGCCGg -3'
miRNA:   3'- aUAUUCUGCG-----GGCCa------------CUACUG--CCGGC- -5'
21512 3' -55.5 NC_004812.1 + 148569 0.66 0.908667
Target:  5'- ---cGGGCGCCgGGgGGUGcCGGCgGa -3'
miRNA:   3'- auauUCUGCGGgCCaCUACuGCCGgC- -5'
21512 3' -55.5 NC_004812.1 + 58070 0.66 0.931142
Target:  5'- ----cGGCGCCCGGcGccGA-GGCCGc -3'
miRNA:   3'- auauuCUGCGGGCCaCuaCUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 56522 0.66 0.908667
Target:  5'- aUAUAAGGCGCuCCGGcGGcc-CGGCCc -3'
miRNA:   3'- -AUAUUCUGCG-GGCCaCUacuGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 111973 0.66 0.908667
Target:  5'- --aGAGGCGCUCaG-GcgGGCGGCCc -3'
miRNA:   3'- auaUUCUGCGGGcCaCuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 154740 0.66 0.908667
Target:  5'- ---cGGGCGCCCGGgccaAUGGaGGCCc -3'
miRNA:   3'- auauUCUGCGGGCCac--UACUgCCGGc -5'
21512 3' -55.5 NC_004812.1 + 141988 0.66 0.925883
Target:  5'- ------cCGCCCgaGGUGGUggaGACGGCCa -3'
miRNA:   3'- auauucuGCGGG--CCACUA---CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 6192 0.66 0.931142
Target:  5'- ---cGGAgGCCCGGggcgcccGGCGGCCc -3'
miRNA:   3'- auauUCUgCGGGCCacua---CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 36249 0.66 0.908667
Target:  5'- --gGGGAgGCCCGG-GAgaGGCGGCa- -3'
miRNA:   3'- auaUUCUgCGGGCCaCUa-CUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 149116 0.66 0.931142
Target:  5'- gGUuGGGCGcCCCGGUcGUccgcGCGGCCGc -3'
miRNA:   3'- aUAuUCUGC-GGGCCAcUAc---UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 148253 0.66 0.914645
Target:  5'- ---cGGcCGCCgacgCGGUGG-GGCGGCCGc -3'
miRNA:   3'- auauUCuGCGG----GCCACUaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 108956 0.66 0.933178
Target:  5'- --gGGGGCGCgggggaucgcgggacCCGGUGGggaGGCGGCUu -3'
miRNA:   3'- auaUUCUGCG---------------GGCCACUa--CUGCCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.