miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 67772 0.66 0.920384
Target:  5'- --gGAGGCggcgGCCCGGggcGcgGGCGGCUu -3'
miRNA:   3'- auaUUCUG----CGGGCCa--CuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 5348 0.66 0.908667
Target:  5'- --gGGGAgGCCCGG-GAgaGGCGGCa- -3'
miRNA:   3'- auaUUCUgCGGGCCaCUa-CUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 72445 0.66 0.914645
Target:  5'- --cGGGcuCGUCCGG-GAgGAUGGCCGg -3'
miRNA:   3'- auaUUCu-GCGGGCCaCUaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 117668 0.66 0.908667
Target:  5'- ---cGGGCGCCgGGgGGUGcCGGCgGa -3'
miRNA:   3'- auauUCUGCGGgCCaCUACuGCCGgC- -5'
21512 3' -55.5 NC_004812.1 + 112517 0.66 0.914645
Target:  5'- ---cAGAcuCGCUCGGcGAUGGCaGCCGa -3'
miRNA:   3'- auauUCU--GCGGGCCaCUACUGcCGGC- -5'
21512 3' -55.5 NC_004812.1 + 129539 0.66 0.914645
Target:  5'- cGUGAGGCaCUCGGcggcGgcGGCGGCCGc -3'
miRNA:   3'- aUAUUCUGcGGGCCa---CuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 69230 0.66 0.925883
Target:  5'- --cGGGGCcCCCGGgggggcGAUcACGGCCGa -3'
miRNA:   3'- auaUUCUGcGGGCCa-----CUAcUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 123839 0.66 0.908667
Target:  5'- ---cGGGCGCCCGGgccaAUGGaGGCCc -3'
miRNA:   3'- auauUCUGCGGGCCac--UACUgCCGGc -5'
21512 3' -55.5 NC_004812.1 + 117352 0.66 0.914645
Target:  5'- ---cGGcCGCCgacgCGGUGG-GGCGGCCGc -3'
miRNA:   3'- auauUCuGCGG----GCCACUaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 56879 0.66 0.908667
Target:  5'- gGUcAGaACGCCCGGgccuGUG-CGGCCa -3'
miRNA:   3'- aUAuUC-UGCGGGCCac--UACuGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 108956 0.66 0.933178
Target:  5'- --gGGGGCGCgggggaucgcgggacCCGGUGGggaGGCGGCUu -3'
miRNA:   3'- auaUUCUGCG---------------GGCCACUa--CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 4644 0.66 0.914645
Target:  5'- --cGGGACGCCCGcGcGggGAggggcucgcCGGCCGu -3'
miRNA:   3'- auaUUCUGCGGGC-CaCuaCU---------GCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 21786 0.66 0.914645
Target:  5'- --cAGGACGCggUCGGUGAagcGGCGGCa- -3'
miRNA:   3'- auaUUCUGCG--GGCCACUa--CUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 117549 0.66 0.908667
Target:  5'- cAUGGGGgGCCCcaGGUGAgcgcGCgGGCCGa -3'
miRNA:   3'- aUAUUCUgCGGG--CCACUac--UG-CCGGC- -5'
21512 3' -55.5 NC_004812.1 + 114408 0.66 0.91982
Target:  5'- --gAAGACGCCCucgacaccgcgcgGGUG--GACGGCgCGu -3'
miRNA:   3'- auaUUCUGCGGG-------------CCACuaCUGCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 47587 0.66 0.920384
Target:  5'- --gAGGGCGCUCGG-GGUcGCGGCg- -3'
miRNA:   3'- auaUUCUGCGGGCCaCUAcUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 127986 0.66 0.920384
Target:  5'- --cGGGGCG-CCGGcGgcGGCGGCCu -3'
miRNA:   3'- auaUUCUGCgGGCCaCuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 53076 0.66 0.925883
Target:  5'- --cGGGcACGCa-GGUGGaGACGGCCa -3'
miRNA:   3'- auaUUC-UGCGggCCACUaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 112970 0.66 0.914645
Target:  5'- ----cGACGUCCGGcggcGAUGgaucgcggcgccGCGGCCGc -3'
miRNA:   3'- auauuCUGCGGGCCa---CUAC------------UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 114149 0.66 0.908667
Target:  5'- ----cGGCGUCgGGaGAUGgauGCGGCCGg -3'
miRNA:   3'- auauuCUGCGGgCCaCUAC---UGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.