miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 28642 0.7 0.745904
Target:  5'- gAUGGGggccuccgacGCGCCCGccgGAcUGGCGGCCGg -3'
miRNA:   3'- aUAUUC----------UGCGGGCca-CU-ACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 137042 0.72 0.655586
Target:  5'- --gAGGugGCCgGgGUGGUGGCcGGCCu -3'
miRNA:   3'- auaUUCugCGGgC-CACUACUG-CCGGc -5'
21512 3' -55.5 NC_004812.1 + 95862 0.72 0.655586
Target:  5'- --cGAGGCG-CgGGUGcgGugGGCCGa -3'
miRNA:   3'- auaUUCUGCgGgCCACuaCugCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 33468 0.71 0.68618
Target:  5'- ----cGGCGCCCuGcgGcgGACGGCCGa -3'
miRNA:   3'- auauuCUGCGGGcCa-CuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 103265 0.71 0.696299
Target:  5'- ---cAGGCGCgCGGgGgcGACGGCCGc -3'
miRNA:   3'- auauUCUGCGgGCCaCuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 130460 0.71 0.706365
Target:  5'- --gAGGGCGgCCGGcg--GGCGGCCGg -3'
miRNA:   3'- auaUUCUGCgGGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 29840 0.71 0.706365
Target:  5'- --aGAGGCGCcacCCGGUGGccUGA-GGCCGg -3'
miRNA:   3'- auaUUCUGCG---GGCCACU--ACUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 98508 0.7 0.726298
Target:  5'- --cGGGGCGCCgGGUcccgGGCGGCCc -3'
miRNA:   3'- auaUUCUGCGGgCCAcua-CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 113034 0.7 0.736147
Target:  5'- ---cGGGCGCgCCGGacg-GACGGCCGc -3'
miRNA:   3'- auauUCUGCG-GGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 68202 0.72 0.635082
Target:  5'- ---cGGACGCCCGGccgcgcGCGGCCGg -3'
miRNA:   3'- auauUCUGCGGGCCacuac-UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 48810 0.72 0.635082
Target:  5'- -----cGCGCCauCGGUGAUGaggGCGGCCGg -3'
miRNA:   3'- auauucUGCGG--GCCACUAC---UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 23431 0.72 0.635082
Target:  5'- ----uGGCGuCCUGGUGugccUGGCGGCCGc -3'
miRNA:   3'- auauuCUGC-GGGCCACu---ACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 124191 0.76 0.43847
Target:  5'- ---cGGGCGCCCGGg---GACGGCCc -3'
miRNA:   3'- auauUCUGCGGGCCacuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 76534 0.75 0.456755
Target:  5'- --gAGGACGCCCuGGgcccgGACGGCCGc -3'
miRNA:   3'- auaUUCUGCGGG-CCacua-CUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 101078 0.74 0.494502
Target:  5'- cGUGAGGCGCgCCGcGUGgcGcACGGCCa -3'
miRNA:   3'- aUAUUCUGCG-GGC-CACuaC-UGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 156021 0.74 0.52372
Target:  5'- --gGGGACGCCCGGgGccGGgGGCCGc -3'
miRNA:   3'- auaUUCUGCGGGCCaCuaCUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 106573 0.73 0.563642
Target:  5'- --gGAGGCGCCCGGgccgGGcgcaGACGGCgCGa -3'
miRNA:   3'- auaUUCUGCGGGCCa---CUa---CUGCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 125330 0.73 0.583915
Target:  5'- --cGGGGCGCCgCGG-GAUGcgccggcgGCGGCCGa -3'
miRNA:   3'- auaUUCUGCGG-GCCaCUAC--------UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 107311 0.73 0.594107
Target:  5'- -uUGGGGCGuUCCGG-GggGGCGGCCGc -3'
miRNA:   3'- auAUUCUGC-GGGCCaCuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 102912 0.72 0.614568
Target:  5'- ----cGGCGCCuCGG-GggGGCGGCCGc -3'
miRNA:   3'- auauuCUGCGG-GCCaCuaCUGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.