miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 51080 1.06 0.005023
Target:  5'- cUAUAAGACGCCCGGUGAUGACGGCCGc -3'
miRNA:   3'- -AUAUUCUGCGGGCCACUACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 13400 0.76 0.429486
Target:  5'- --gGGGGCGCggCGGgGGUGACGGCCGg -3'
miRNA:   3'- auaUUCUGCGg-GCCaCUACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 25860 0.76 0.429486
Target:  5'- cAUGAGGgGCCUGGgguUGgcGGCGGCCGg -3'
miRNA:   3'- aUAUUCUgCGGGCC---ACuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 155092 0.76 0.43847
Target:  5'- ---cGGGCGCCCGGg---GACGGCCc -3'
miRNA:   3'- auauUCUGCGGGCCacuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 124191 0.76 0.43847
Target:  5'- ---cGGGCGCCCGGg---GACGGCCc -3'
miRNA:   3'- auauUCUGCGGGCCacuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 76534 0.75 0.456755
Target:  5'- --gAGGACGCCCuGGgcccgGACGGCCGc -3'
miRNA:   3'- auaUUCUGCGGG-CCacua-CUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 101078 0.74 0.494502
Target:  5'- cGUGAGGCGCgCCGcGUGgcGcACGGCCa -3'
miRNA:   3'- aUAUUCUGCG-GGC-CACuaC-UGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 30513 0.74 0.52372
Target:  5'- --gGGGACGCCCGGgGccGGgGGCCGc -3'
miRNA:   3'- auaUUCUGCGGGCCaCuaCUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 156021 0.74 0.52372
Target:  5'- --gGGGACGCCCGGgGccGGgGGCCGc -3'
miRNA:   3'- auaUUCUGCGGGCCaCuaCUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 17953 0.74 0.533608
Target:  5'- --gGGGuCGCCCGGgcGAcGGCGGCCGu -3'
miRNA:   3'- auaUUCuGCGGGCCa-CUaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 106573 0.73 0.563642
Target:  5'- --gGAGGCGCCCGGgccgGGcgcaGACGGCgCGa -3'
miRNA:   3'- auaUUCUGCGGGCCa---CUa---CUGCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 119009 0.73 0.573758
Target:  5'- --cGGGACuGCCgGGUGAacgcgGGCGGCCa -3'
miRNA:   3'- auaUUCUG-CGGgCCACUa----CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 125330 0.73 0.583915
Target:  5'- --cGGGGCGCCgCGG-GAUGcgccggcgGCGGCCGa -3'
miRNA:   3'- auaUUCUGCGG-GCCaCUAC--------UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 156231 0.73 0.583915
Target:  5'- --cGGGGCGCCgCGG-GAUGcgccggcgGCGGCCGa -3'
miRNA:   3'- auaUUCUGCGG-GCCaCUAC--------UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 16127 0.73 0.594107
Target:  5'- gGUGgcGGGgGCCCccguGGUGggGGCGGCCGu -3'
miRNA:   3'- aUAU--UCUgCGGG----CCACuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 107311 0.73 0.594107
Target:  5'- -uUGGGGCGuUCCGG-GggGGCGGCCGc -3'
miRNA:   3'- auAUUCUGC-GGGCCaCuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 102912 0.72 0.614568
Target:  5'- ----cGGCGCCuCGG-GggGGCGGCCGc -3'
miRNA:   3'- auauuCUGCGG-GCCaCuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 68202 0.72 0.635082
Target:  5'- ---cGGACGCCCGGccgcgcGCGGCCGg -3'
miRNA:   3'- auauUCUGCGGGCCacuac-UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 23431 0.72 0.635082
Target:  5'- ----uGGCGuCCUGGUGugccUGGCGGCCGc -3'
miRNA:   3'- auauuCUGC-GGGCCACu---ACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 48810 0.72 0.635082
Target:  5'- -----cGCGCCauCGGUGAUGaggGCGGCCGg -3'
miRNA:   3'- auauucUGCGG--GCCACUAC---UGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.