miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 3' -55.5 NC_004812.1 + 2478 0.66 0.920384
Target:  5'- --cGGGGCG-CCGGcGgcGGCGGCCu -3'
miRNA:   3'- auaUUCUGCgGGCCaCuaCUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 2694 0.67 0.875286
Target:  5'- --gAAGACGCCgGGcccGAaGacGCGGCCGg -3'
miRNA:   3'- auaUUCUGCGGgCCa--CUaC--UGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 4030 0.66 0.914645
Target:  5'- cGUGAGGCaCUCGGcggcGgcGGCGGCCGc -3'
miRNA:   3'- aUAUUCUGcGGGCCa---CuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 4644 0.66 0.914645
Target:  5'- --cGGGACGCCCGcGcGggGAggggcucgcCGGCCGu -3'
miRNA:   3'- auaUUCUGCGGGC-CaCuaCU---------GCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 4952 0.71 0.706365
Target:  5'- --gAGGGCGgCCGGcg--GGCGGCCGg -3'
miRNA:   3'- auaUUCUGCgGGCCacuaCUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 5132 0.67 0.875286
Target:  5'- --cGGGGcCGCCCGGgGAcGGCGGCg- -3'
miRNA:   3'- auaUUCU-GCGGGCCaCUaCUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 5348 0.66 0.908667
Target:  5'- --gGGGAgGCCCGG-GAgaGGCGGCa- -3'
miRNA:   3'- auaUUCUgCGGGCCaCUa-CUGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 6192 0.66 0.931142
Target:  5'- ---cGGAgGCCCGGggcgcccGGCGGCCc -3'
miRNA:   3'- auauUCUgCGGGCCacua---CUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 7616 0.66 0.925883
Target:  5'- --gGAGGuCGCgCCGGaGAcgcgcGGCGGCCGg -3'
miRNA:   3'- auaUUCU-GCG-GGCCaCUa----CUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 8265 0.67 0.902453
Target:  5'- --gGGGGCGCCgGGg---GcCGGCCGa -3'
miRNA:   3'- auaUUCUGCGGgCCacuaCuGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 11310 0.69 0.810888
Target:  5'- --cGGGGCGCCgCGG-GgcGGgGGCCGg -3'
miRNA:   3'- auaUUCUGCGG-GCCaCuaCUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 12169 0.69 0.783841
Target:  5'- aAUGAGcACGUCCGGgucacgGAgGGCCGa -3'
miRNA:   3'- aUAUUC-UGCGGGCCacua--CUgCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 12369 0.67 0.902453
Target:  5'- --gGGGcGCGCCCGGccgc-GCGGCCGg -3'
miRNA:   3'- auaUUC-UGCGGGCCacuacUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 12897 0.69 0.810888
Target:  5'- ----cGGCGCUCGGUGcccccggGGCGGCgCGg -3'
miRNA:   3'- auauuCUGCGGGCCACua-----CUGCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 13400 0.76 0.429486
Target:  5'- --gGGGGCGCggCGGgGGUGACGGCCGg -3'
miRNA:   3'- auaUUCUGCGg-GCCaCUACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 13513 0.66 0.925883
Target:  5'- --cGGGGC-CCaCGGc-GUGACGGCCGg -3'
miRNA:   3'- auaUUCUGcGG-GCCacUACUGCCGGC- -5'
21512 3' -55.5 NC_004812.1 + 14242 0.68 0.844634
Target:  5'- -----cGCGCCgGGUGAUGuCGGCg- -3'
miRNA:   3'- auauucUGCGGgCCACUACuGCCGgc -5'
21512 3' -55.5 NC_004812.1 + 14454 0.66 0.931142
Target:  5'- ----uGGCGCCCGuGUGGccgGAgGGCgCGg -3'
miRNA:   3'- auauuCUGCGGGC-CACUa--CUgCCG-GC- -5'
21512 3' -55.5 NC_004812.1 + 16010 0.66 0.920384
Target:  5'- --gAGGGCGCCgGcGcccAUGGCGGCCa -3'
miRNA:   3'- auaUUCUGCGGgC-Cac-UACUGCCGGc -5'
21512 3' -55.5 NC_004812.1 + 16127 0.73 0.594107
Target:  5'- gGUGgcGGGgGCCCccguGGUGggGGCGGCCGu -3'
miRNA:   3'- aUAU--UCUgCGGG----CCACuaCUGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.