miRNA display CGI


Results 21 - 40 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 70723 0.66 0.431649
Target:  5'- gUCGaGCCGCUcgGGGUCCGaguccagcgaggaGUCGUCUGa -3'
miRNA:   3'- gAGC-CGGCGG--CCCGGGC-------------CAGCGGACg -5'
21512 5' -66.8 NC_004812.1 + 101217 0.66 0.44078
Target:  5'- -gCGGCCGCCagcagGGGCgCCG--CGCCgGCc -3'
miRNA:   3'- gaGCCGGCGG-----CCCG-GGCcaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 125662 0.66 0.44078
Target:  5'- -cCGcGCCGCCGcGCCCGcGgccCGCC-GCg -3'
miRNA:   3'- gaGC-CGGCGGCcCGGGC-Ca--GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 75903 0.66 0.457659
Target:  5'- uCUUGGCguuCGCCgcgaGGGCCugcuCGGcgCGCUUGCg -3'
miRNA:   3'- -GAGCCG---GCGG----CCCGG----GCCa-GCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 137699 0.66 0.483608
Target:  5'- -cCGGCUGCuCGcGGCCCuGUacgaGCCgGCc -3'
miRNA:   3'- gaGCCGGCG-GC-CCGGGcCAg---CGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 74513 0.66 0.449176
Target:  5'- aCUCGGCCaGCagGcGGCCCaGGgCGUCgGCg -3'
miRNA:   3'- -GAGCCGG-CGg-C-CCGGG-CCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 46795 0.66 0.457659
Target:  5'- gUCGaGCCgguGCUGGGCaucgaagauCCGGgugaUCGUCUGCg -3'
miRNA:   3'- gAGC-CGG---CGGCCCG---------GGCC----AGCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 69415 0.66 0.449176
Target:  5'- uUCGGUUcaUGGGCCCGGaggaCGCCgGCc -3'
miRNA:   3'- gAGCCGGcgGCCCGGGCCa---GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 126734 0.66 0.466228
Target:  5'- -cCGGCCcCCGGGguCCUGGcggacggcUUGUCUGCg -3'
miRNA:   3'- gaGCCGGcGGCCC--GGGCC--------AGCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 125189 0.66 0.466228
Target:  5'- -cCGGgCGCgCGGGCCCGccccgGCCgcgGCg -3'
miRNA:   3'- gaGCCgGCG-GCCCGGGCcag--CGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 155408 0.66 0.44078
Target:  5'- --gGGCCggGCCGGGCgUGGUgGCg-GCg -3'
miRNA:   3'- gagCCGG--CGGCCCGgGCCAgCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 117759 0.66 0.44078
Target:  5'- uCUCGGCCcccCCGGacgcgcccCCCGGccgCGCCgGCg -3'
miRNA:   3'- -GAGCCGGc--GGCCc-------GGGCCa--GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 7298 0.66 0.466228
Target:  5'- --aGGCCGCCugucGCCCG-UCGCCcgGCc -3'
miRNA:   3'- gagCCGGCGGcc--CGGGCcAGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 8036 0.66 0.457659
Target:  5'- -cCGGCCuccGCCGGcacccCCCGG-CGCCcgGCc -3'
miRNA:   3'- gaGCCGG---CGGCCc----GGGCCaGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 138316 0.66 0.44078
Target:  5'- -gCGGuccuacucCCGCCGcGGCCUGG-C-CCUGCu -3'
miRNA:   3'- gaGCC--------GGCGGC-CCGGGCCaGcGGACG- -5'
21512 5' -66.8 NC_004812.1 + 149174 0.66 0.457659
Target:  5'- --gGGgCGgCGucCCCGGUCGCCUaGCa -3'
miRNA:   3'- gagCCgGCgGCccGGGCCAGCGGA-CG- -5'
21512 5' -66.8 NC_004812.1 + 156387 0.66 0.432474
Target:  5'- --gGGCCGCgGGGgCCGG--GgCUGCg -3'
miRNA:   3'- gagCCGGCGgCCCgGGCCagCgGACG- -5'
21512 5' -66.8 NC_004812.1 + 151339 0.66 0.466228
Target:  5'- gUCGGCCgagcGCgGGGCCgCGG-CgGCCgacucgGCg -3'
miRNA:   3'- gAGCCGG----CGgCCCGG-GCCaG-CGGa-----CG- -5'
21512 5' -66.8 NC_004812.1 + 16838 0.66 0.466228
Target:  5'- -gCGGCCGCCGcccuuaGGCgCgCGGUCGCg--- -3'
miRNA:   3'- gaGCCGGCGGC------CCG-G-GCCAGCGgacg -5'
21512 5' -66.8 NC_004812.1 + 147493 0.66 0.457659
Target:  5'- gUgGcGCCGCgGgGGUCCGGUgGCCccgagGCg -3'
miRNA:   3'- gAgC-CGGCGgC-CCGGGCCAgCGGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.