miRNA display CGI


Results 1 - 20 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 69415 0.66 0.449176
Target:  5'- uUCGGUUcaUGGGCCCGGaggaCGCCgGCc -3'
miRNA:   3'- gAGCCGGcgGCCCGGGCCa---GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 83265 0.66 0.432474
Target:  5'- gUCGGCCG--GGGCgCCGcUCGCC-GCa -3'
miRNA:   3'- gAGCCGGCggCCCG-GGCcAGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 60005 0.66 0.439945
Target:  5'- uUCGGguCCGCgGGGCCgGcGUCGUCgaccucggucaggUGCa -3'
miRNA:   3'- gAGCC--GGCGgCCCGGgC-CAGCGG-------------ACG- -5'
21512 5' -66.8 NC_004812.1 + 128253 0.66 0.432474
Target:  5'- gUCGcGCgCGgCGGGCCagCGGacgUCGCaCUGCg -3'
miRNA:   3'- gAGC-CG-GCgGCCCGG--GCC---AGCG-GACG- -5'
21512 5' -66.8 NC_004812.1 + 156387 0.66 0.432474
Target:  5'- --gGGCCGCgGGGgCCGG--GgCUGCg -3'
miRNA:   3'- gagCCGGCGgCCCgGGCCagCgGACG- -5'
21512 5' -66.8 NC_004812.1 + 79396 0.66 0.44078
Target:  5'- gUCGGCCGCgCcagcuGGCUCGGgggcCGCC-GCu -3'
miRNA:   3'- gAGCCGGCG-Gc----CCGGGCCa---GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 137699 0.66 0.483608
Target:  5'- -cCGGCUGCuCGcGGCCCuGUacgaGCCgGCc -3'
miRNA:   3'- gaGCCGGCG-GC-CCGGGcCAg---CGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 50585 0.66 0.44078
Target:  5'- -cCGGCgGCa-GGCCgGGaUCGCCggGCa -3'
miRNA:   3'- gaGCCGgCGgcCCGGgCC-AGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 138316 0.66 0.44078
Target:  5'- -gCGGuccuacucCCGCCGcGGCCUGG-C-CCUGCu -3'
miRNA:   3'- gaGCC--------GGCGGC-CCGGGCCaGcGGACG- -5'
21512 5' -66.8 NC_004812.1 + 125662 0.66 0.44078
Target:  5'- -cCGcGCCGCCGcGCCCGcGgccCGCC-GCg -3'
miRNA:   3'- gaGC-CGGCGGCcCGGGC-Ca--GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 101217 0.66 0.44078
Target:  5'- -gCGGCCGCCagcagGGGCgCCG--CGCCgGCc -3'
miRNA:   3'- gaGCCGGCGG-----CCCG-GGCcaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 117759 0.66 0.44078
Target:  5'- uCUCGGCCcccCCGGacgcgcccCCCGGccgCGCCgGCg -3'
miRNA:   3'- -GAGCCGGc--GGCCc-------GGGCCa--GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 31251 0.66 0.449176
Target:  5'- gUCGGCaaagcgCGCCGGGa--GGUCGUCgcccgGCg -3'
miRNA:   3'- gAGCCG------GCGGCCCgggCCAGCGGa----CG- -5'
21512 5' -66.8 NC_004812.1 + 151650 0.66 0.44078
Target:  5'- cCUCGccGCCGCCGGccGCCCgccGGcCGCCcuccaGCg -3'
miRNA:   3'- -GAGC--CGGCGGCC--CGGG---CCaGCGGa----CG- -5'
21512 5' -66.8 NC_004812.1 + 39213 0.66 0.432474
Target:  5'- gCUCGGCCaCCagcguGGCCCGGgccacgCGCgUGg -3'
miRNA:   3'- -GAGCCGGcGGc----CCGGGCCa-----GCGgACg -5'
21512 5' -66.8 NC_004812.1 + 104855 0.66 0.449176
Target:  5'- uCUUGGCCgcGCCGgcGGCCgcggCGGUCGUCgucGCc -3'
miRNA:   3'- -GAGCCGG--CGGC--CCGG----GCCAGCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 70723 0.66 0.431649
Target:  5'- gUCGaGCCGCUcgGGGUCCGaguccagcgaggaGUCGUCUGa -3'
miRNA:   3'- gAGC-CGGCGG--CCCGGGC-------------CAGCGGACg -5'
21512 5' -66.8 NC_004812.1 + 138430 0.66 0.44078
Target:  5'- --gGGCUGCCGGcGCCCcaUCGCCcucagGUg -3'
miRNA:   3'- gagCCGGCGGCC-CGGGccAGCGGa----CG- -5'
21512 5' -66.8 NC_004812.1 + 74513 0.66 0.449176
Target:  5'- aCUCGGCCaGCagGcGGCCCaGGgCGUCgGCg -3'
miRNA:   3'- -GAGCCGG-CGg-C-CCGGG-CCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 155408 0.66 0.44078
Target:  5'- --gGGCCggGCCGGGCgUGGUgGCg-GCg -3'
miRNA:   3'- gagCCGG--CGGCCCGgGCCAgCGgaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.