miRNA display CGI


Results 1 - 20 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 153 0.66 0.44078
Target:  5'- -cCGcGCCGCCGcGCCCGcGgccCGCC-GCg -3'
miRNA:   3'- gaGC-CGGCGGCcCGGGC-Ca--GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 197 0.7 0.281255
Target:  5'- -gCGcGCCGCCgggggaGGGCCCGgGUCGCgCaGCc -3'
miRNA:   3'- gaGC-CGGCGG------CCCGGGC-CAGCG-GaCG- -5'
21512 5' -66.8 NC_004812.1 + 369 0.67 0.42426
Target:  5'- uCUCGGCCGCCGccGGCgcaucccgCGG-CGCCccGCc -3'
miRNA:   3'- -GAGCCGGCGGC--CCGg-------GCCaGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 463 0.72 0.191703
Target:  5'- --gGGCCGCCGGcgcGCCUGcGUgcgcacgCGCCUGCu -3'
miRNA:   3'- gagCCGGCGGCC---CGGGC-CA-------GCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 509 0.74 0.13509
Target:  5'- -aCGGCCGCCGcGGCCgGGgcggGCCcGCg -3'
miRNA:   3'- gaGCCGGCGGC-CCGGgCCag--CGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 705 0.66 0.449176
Target:  5'- cCUCGGCgCGgCa-GCCCGGgCGCCgGCc -3'
miRNA:   3'- -GAGCCG-GCgGccCGGGCCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 720 0.73 0.167139
Target:  5'- gUCGG-CGCC-GGCgCGGUCGCCgGCg -3'
miRNA:   3'- gAGCCgGCGGcCCGgGCCAGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 1018 0.74 0.138351
Target:  5'- --gGGCCGCgcccccgcgaGGGCCCGGcCGCCcGCg -3'
miRNA:   3'- gagCCGGCGg---------CCCGGGCCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 1065 0.67 0.415333
Target:  5'- -cCGGCCGCgGucuccuccugcccGGCCgCGGUCuccuCCUGCc -3'
miRNA:   3'- gaGCCGGCGgC-------------CCGG-GCCAGc---GGACG- -5'
21512 5' -66.8 NC_004812.1 + 1136 0.69 0.313069
Target:  5'- -cCGGCCGCCaGGCuccCCGGcggCGCgaGCc -3'
miRNA:   3'- gaGCCGGCGGcCCG---GGCCa--GCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 1209 0.66 0.482732
Target:  5'- gCUCGGCCgggggcggcGCCGcGggggcuccuccccGCCCGGgcggCGCCgcgGCc -3'
miRNA:   3'- -GAGCCGG---------CGGC-C-------------CGGGCCa---GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 1425 0.66 0.466228
Target:  5'- -gCGGCCGCggggaGGGgCCGGg-GCC-GCg -3'
miRNA:   3'- gaGCCGGCGg----CCCgGGCCagCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 1482 0.67 0.382335
Target:  5'- cCUCGGCgggcggcggcggagCGCCGgccGGCCCGcGcCGCC-GCg -3'
miRNA:   3'- -GAGCCG--------------GCGGC---CCGGGC-CaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 1668 0.67 0.408116
Target:  5'- gUUGGCCG-CGGcGCCgCGGccCGCCcGCg -3'
miRNA:   3'- gAGCCGGCgGCC-CGG-GCCa-GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 1878 0.68 0.347537
Target:  5'- aUUGGCC-CgGGcGCCCGGgcccCGCCcGCg -3'
miRNA:   3'- gAGCCGGcGgCC-CGGGCCa---GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 2016 0.71 0.225408
Target:  5'- gCUCGgggcgccgacGCCGgCGGGCCuCGGUCGgCgGCg -3'
miRNA:   3'- -GAGC----------CGGCgGCCCGG-GCCAGCgGaCG- -5'
21512 5' -66.8 NC_004812.1 + 2251 0.67 0.392361
Target:  5'- -gCGGCgGCgGGGUCCGcGUCGgCguccGCg -3'
miRNA:   3'- gaGCCGgCGgCCCGGGC-CAGCgGa---CG- -5'
21512 5' -66.8 NC_004812.1 + 2356 0.71 0.220373
Target:  5'- --aGGgCGUCGGGCCCGGcgCGCgCgGCg -3'
miRNA:   3'- gagCCgGCGGCCCGGGCCa-GCG-GaCG- -5'
21512 5' -66.8 NC_004812.1 + 2580 0.69 0.293663
Target:  5'- --gGGCgUGUCGGGCCCGaGgCGCgUGCg -3'
miRNA:   3'- gagCCG-GCGGCCCGGGC-CaGCGgACG- -5'
21512 5' -66.8 NC_004812.1 + 2745 0.66 0.432474
Target:  5'- gUCGcGCgCGgCGGGCCagCGGacgUCGCaCUGCg -3'
miRNA:   3'- gAGC-CG-GCgGCCCGG--GCC---AGCG-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.