miRNA display CGI


Results 1 - 20 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 51114 1.1 0.000329
Target:  5'- aCUCGGCCGCCGGGCCCGGUCGCCUGCu -3'
miRNA:   3'- -GAGCCGGCGGCCCGGGCCAGCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 80356 0.84 0.026947
Target:  5'- -gCGGCgCGCgCGGGCCUGGcCGCCUGCg -3'
miRNA:   3'- gaGCCG-GCG-GCCCGGGCCaGCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 140648 0.82 0.041399
Target:  5'- -cCGGCCGCgGGGCguCCGGUCGCCcgGCc -3'
miRNA:   3'- gaGCCGGCGgCCCG--GGCCAGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 4761 0.81 0.044641
Target:  5'- gCUCGG-CGCCGGGCCaCGGcUCGCCgcugGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCGG-GCC-AGCGGa---CG- -5'
21512 5' -66.8 NC_004812.1 + 130269 0.81 0.044641
Target:  5'- gCUCGG-CGCCGGGCCaCGGcUCGCCgcugGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCGG-GCC-AGCGGa---CG- -5'
21512 5' -66.8 NC_004812.1 + 5632 0.81 0.045776
Target:  5'- gCUCGGggGCCGGGCCCGGggUCGCCggGCg -3'
miRNA:   3'- -GAGCCggCGGCCCGGGCC--AGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 69526 0.81 0.045776
Target:  5'- --aGGCCGCCGGGUCCGGcCGCCcccccGCg -3'
miRNA:   3'- gagCCGGCGGCCCGGGCCaGCGGa----CG- -5'
21512 5' -66.8 NC_004812.1 + 36533 0.81 0.045776
Target:  5'- gCUCGGggGCCGGGCCCGGggUCGCCggGCg -3'
miRNA:   3'- -GAGCCggCGGCCCGGGCC--AGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 100673 0.78 0.069955
Target:  5'- cCUCGG-CGUCGGGCCCGG-CGCUcGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCGGGCCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 79871 0.78 0.071709
Target:  5'- -gCGGCCGCCGGGCCCaGg-GCCcgGCg -3'
miRNA:   3'- gaGCCGGCGGCCCGGGcCagCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 122064 0.78 0.074972
Target:  5'- aCUUGGgCGCCGGGCCUGGgcugggccugagCGCCgggGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCGGGCCa-----------GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 152965 0.78 0.074972
Target:  5'- aCUUGGgCGCCGGGCCUGGgcugggccugagCGCCgggGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCGGGCCa-----------GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 140029 0.77 0.084594
Target:  5'- -cCuGCCGCCcgcGGGCCCGGUCGCCgucccaacaucgagUGCg -3'
miRNA:   3'- gaGcCGGCGG---CCCGGGCCAGCGG--------------ACG- -5'
21512 5' -66.8 NC_004812.1 + 98547 0.77 0.085011
Target:  5'- cCUCGG-CGCCGGGCgCCGGggcccacgagagcUCGCuCUGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCG-GGCC-------------AGCG-GACG- -5'
21512 5' -66.8 NC_004812.1 + 34770 0.77 0.091726
Target:  5'- -gCGGCCGCCGcGGCCCGcaagCGCCcgGCc -3'
miRNA:   3'- gaGCCGGCGGC-CCGGGCca--GCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 3869 0.77 0.091726
Target:  5'- -gCGGCCGCCGcGGCCCGcaagCGCCcgGCc -3'
miRNA:   3'- gaGCCGGCGGC-CCGGGCca--GCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 124890 0.77 0.093998
Target:  5'- uCUCGGCCgagcucGCCGaGGCCCugacGGagGCCUGCg -3'
miRNA:   3'- -GAGCCGG------CGGC-CCGGG----CCagCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 27597 0.76 0.101136
Target:  5'- --gGGCCGCCGGcCCCGGgcccgCGCCcGCg -3'
miRNA:   3'- gagCCGGCGGCCcGGGCCa----GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 153105 0.76 0.101136
Target:  5'- --gGGCCGCCGGcCCCGGgcccgCGCCcGCg -3'
miRNA:   3'- gagCCGGCGGCCcGGGCCa----GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 79121 0.76 0.101136
Target:  5'- -gUGGcCCGCCGGGCCCGGgucccagcccCGCCUccGCu -3'
miRNA:   3'- gaGCC-GGCGGCCCGGGCCa---------GCGGA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.