miRNA display CGI


Results 1 - 20 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 36394 0.74 0.152128
Target:  5'- --gGGCUggGCCGGGCCCagccGGUUGCCcGCg -3'
miRNA:   3'- gagCCGG--CGGCCCGGG----CCAGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 75436 0.75 0.125728
Target:  5'- gCUCcGCCGCgGcGGCCgGGUCGCC-GCg -3'
miRNA:   3'- -GAGcCGGCGgC-CCGGgCCAGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 509 0.74 0.13509
Target:  5'- -aCGGCCGCCGcGGCCgGGgcggGCCcGCg -3'
miRNA:   3'- gaGCCGGCGGC-CCGGgCCag--CGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 117660 0.74 0.13509
Target:  5'- --gGGCCgGCCGGGCgCCGGggggUGCCgGCg -3'
miRNA:   3'- gagCCGG-CGGCCCG-GGCCa---GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 130773 0.74 0.138351
Target:  5'- gUCGGCCGCCGcGGCCCcG-CGCUcgGCc -3'
miRNA:   3'- gAGCCGGCGGC-CCGGGcCaGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 126527 0.74 0.138351
Target:  5'- --gGGCCGCgcccccgcgaGGGCCCGGcCGCCcGCg -3'
miRNA:   3'- gagCCGGCGg---------CCCGGGCCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 21120 0.74 0.139676
Target:  5'- gUCGGCgGCCuGGGCCUGcagcgacacguugguGUCGCCgGCg -3'
miRNA:   3'- gAGCCGgCGG-CCCGGGC---------------CAGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 155469 0.74 0.143038
Target:  5'- gCUCGcGCCGCCGGggaGCCUGGcggccggcuucugccUCGCCgGCg -3'
miRNA:   3'- -GAGC-CGGCGGCC---CGGGCC---------------AGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 62119 0.74 0.145091
Target:  5'- gCUCGGgCGCgGcGGCCCGGagGCCggaucgGCg -3'
miRNA:   3'- -GAGCCgGCGgC-CCGGGCCagCGGa-----CG- -5'
21512 5' -66.8 NC_004812.1 + 8733 0.75 0.125728
Target:  5'- -cCGGCUGCCGGGaaaucuCCCGGgcgCGCC-GCa -3'
miRNA:   3'- gaGCCGGCGGCCC------GGGCCa--GCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 153912 0.75 0.114179
Target:  5'- -cCGGCCGCgucuuCGGGCCCGG-CGUCUucGCg -3'
miRNA:   3'- gaGCCGGCG-----GCCCGGGCCaGCGGA--CG- -5'
21512 5' -66.8 NC_004812.1 + 8375 0.75 0.114179
Target:  5'- -gCGGCCGCCgGGGCCCGGgguCCggggGCg -3'
miRNA:   3'- gaGCCGGCGG-CCCGGGCCagcGGa---CG- -5'
21512 5' -66.8 NC_004812.1 + 5632 0.81 0.045776
Target:  5'- gCUCGGggGCCGGGCCCGGggUCGCCggGCg -3'
miRNA:   3'- -GAGCCggCGGCCCGGGCC--AGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 69526 0.81 0.045776
Target:  5'- --aGGCCGCCGGGUCCGGcCGCCcccccGCg -3'
miRNA:   3'- gagCCGGCGGCCCGGGCCaGCGGa----CG- -5'
21512 5' -66.8 NC_004812.1 + 100673 0.78 0.069955
Target:  5'- cCUCGG-CGUCGGGCCCGG-CGCUcGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCGGGCCaGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 79871 0.78 0.071709
Target:  5'- -gCGGCCGCCGGGCCCaGg-GCCcgGCg -3'
miRNA:   3'- gaGCCGGCGGCCCGGGcCagCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 122064 0.78 0.074972
Target:  5'- aCUUGGgCGCCGGGCCUGGgcugggccugagCGCCgggGCg -3'
miRNA:   3'- -GAGCCgGCGGCCCGGGCCa-----------GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 140029 0.77 0.084594
Target:  5'- -cCuGCCGCCcgcGGGCCCGGUCGCCgucccaacaucgagUGCg -3'
miRNA:   3'- gaGcCGGCGG---CCCGGGCCAGCGG--------------ACG- -5'
21512 5' -66.8 NC_004812.1 + 3869 0.77 0.091726
Target:  5'- -gCGGCCGCCGcGGCCCGcaagCGCCcgGCc -3'
miRNA:   3'- gaGCCGGCGGC-CCGGGCca--GCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 153105 0.76 0.101136
Target:  5'- --gGGCCGCCGGcCCCGGgcccgCGCCcGCg -3'
miRNA:   3'- gagCCGGCGGCCcGGGCCa----GCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.