miRNA display CGI


Results 41 - 60 of 591 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21512 5' -66.8 NC_004812.1 + 35288 0.66 0.469678
Target:  5'- -cUGGCCGa-GGcgucGCCCGGguggucccgccgcacUCGCCUGCc -3'
miRNA:   3'- gaGCCGGCggCC----CGGGCC---------------AGCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 4387 0.66 0.469678
Target:  5'- -cUGGCCGa-GGcgucGCCCGGguggucccgccgcacUCGCCUGCc -3'
miRNA:   3'- gaGCCGGCggCC----CGGGCC---------------AGCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 1425 0.66 0.466228
Target:  5'- -gCGGCCGCggggaGGGgCCGGg-GCC-GCg -3'
miRNA:   3'- gaGCCGGCGg----CCCgGGCCagCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 38199 0.66 0.466228
Target:  5'- --aGGCCGCCugucGCCCG-UCGCCcgGCc -3'
miRNA:   3'- gagCCGGCGGcc--CGGGCcAGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 25831 0.66 0.466228
Target:  5'- gUCGGCCgagcGCgGGGCCgCGG-CgGCCgacucgGCg -3'
miRNA:   3'- gAGCCGG----CGgCCCGG-GCCaG-CGGa-----CG- -5'
21512 5' -66.8 NC_004812.1 + 16838 0.66 0.466228
Target:  5'- -gCGGCCGCCGcccuuaGGCgCgCGGUCGCg--- -3'
miRNA:   3'- gaGCCGGCGGC------CCG-G-GCCAGCGgacg -5'
21512 5' -66.8 NC_004812.1 + 101917 0.66 0.466228
Target:  5'- -gCGGCgGUCGGGCCuCGGg-GCCccggacGCg -3'
miRNA:   3'- gaGCCGgCGGCCCGG-GCCagCGGa-----CG- -5'
21512 5' -66.8 NC_004812.1 + 145006 0.66 0.466228
Target:  5'- -cCGGCaCGCCGaGCCCGccCGCCgUGUc -3'
miRNA:   3'- gaGCCG-GCGGCcCGGGCcaGCGG-ACG- -5'
21512 5' -66.8 NC_004812.1 + 151339 0.66 0.466228
Target:  5'- gUCGGCCgagcGCgGGGCCgCGG-CgGCCgacucgGCg -3'
miRNA:   3'- gAGCCGG----CGgCCCGG-GCCaG-CGGa-----CG- -5'
21512 5' -66.8 NC_004812.1 + 7298 0.66 0.466228
Target:  5'- --aGGCCGCCugucGCCCG-UCGCCcgGCc -3'
miRNA:   3'- gagCCGGCGGcc--CGGGCcAGCGGa-CG- -5'
21512 5' -66.8 NC_004812.1 + 77453 0.66 0.466228
Target:  5'- gCUCGGCCGggGGGCUC-GUgGCgaGCg -3'
miRNA:   3'- -GAGCCGGCggCCCGGGcCAgCGgaCG- -5'
21512 5' -66.8 NC_004812.1 + 73131 0.66 0.466228
Target:  5'- --gGGCCG-CGGGaUCCGGcgCGCCgccGCg -3'
miRNA:   3'- gagCCGGCgGCCC-GGGCCa-GCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 138567 0.66 0.466228
Target:  5'- cCUC-GCUGCUGGuG-CCGGUCGUCgGCu -3'
miRNA:   3'- -GAGcCGGCGGCC-CgGGCCAGCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 125189 0.66 0.466228
Target:  5'- -cCGGgCGCgCGGGCCCGccccgGCCgcgGCg -3'
miRNA:   3'- gaGCCgGCG-GCCCGGGCcag--CGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 137859 0.66 0.466228
Target:  5'- cCUCGuCUGCCGGGCCCucaccuucgauGG-CGCgCgGCg -3'
miRNA:   3'- -GAGCcGGCGGCCCGGG-----------CCaGCG-GaCG- -5'
21512 5' -66.8 NC_004812.1 + 103959 0.66 0.466228
Target:  5'- --gGGCCGCCGGGgggaCCGGaacggggGgCUGCg -3'
miRNA:   3'- gagCCGGCGGCCCg---GGCCag-----CgGACG- -5'
21512 5' -66.8 NC_004812.1 + 126734 0.66 0.466228
Target:  5'- -cCGGCCcCCGGGguCCUGGcggacggcUUGUCUGCg -3'
miRNA:   3'- gaGCCGGcGGCCC--GGGCC--------AGCGGACG- -5'
21512 5' -66.8 NC_004812.1 + 98400 0.66 0.466228
Target:  5'- -gCGGCCGCgGGGC--GG-CGCCgcaGCg -3'
miRNA:   3'- gaGCCGGCGgCCCGggCCaGCGGa--CG- -5'
21512 5' -66.8 NC_004812.1 + 126933 0.66 0.466228
Target:  5'- -gCGGCCGCggggaGGGgCCGGg-GCC-GCg -3'
miRNA:   3'- gaGCCGGCGg----CCCgGGCCagCGGaCG- -5'
21512 5' -66.8 NC_004812.1 + 102117 0.66 0.466228
Target:  5'- -cCGuGCCGCCGGcCCCGccGUCGCUgucGUa -3'
miRNA:   3'- gaGC-CGGCGGCCcGGGC--CAGCGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.