miRNA display CGI


Results 41 - 60 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21513 3' -52.4 NC_004812.1 + 5278 0.67 0.98
Target:  5'- aCGGAGgcGGGGGGAGg--CcCG-GGAGGa -3'
miRNA:   3'- -GCCUU--CCCCCUUCaaaGaGCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 5623 0.67 0.98
Target:  5'- cCGGAGGcggcucGGGGGccgggcccGGggUCgccgggCGCGAGGGg -3'
miRNA:   3'- -GCCUUC------CCCCU--------UCaaAGa-----GCGCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 36179 0.67 0.98
Target:  5'- aCGGAGgcGGGGGGAGg--CcCG-GGAGGa -3'
miRNA:   3'- -GCCUU--CCCCCUUCaaaGaGCgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 21588 0.67 0.98
Target:  5'- ----cGGGGGugucUUUCUCGCGAcgGGGa -3'
miRNA:   3'- gccuuCCCCCuuc-AAAGAGCGCU--UCC- -5'
21513 3' -52.4 NC_004812.1 + 5853 0.67 0.979557
Target:  5'- uCGGGAGGcGGGggGaacaugggCGCGGgccGGGg -3'
miRNA:   3'- -GCCUUCC-CCCuuCaaaga---GCGCU---UCC- -5'
21513 3' -52.4 NC_004812.1 + 36754 0.67 0.979557
Target:  5'- uCGGGAGGcGGGggGaacaugggCGCGGgccGGGg -3'
miRNA:   3'- -GCCUUCC-CCCuuCaaaga---GCGCU---UCC- -5'
21513 3' -52.4 NC_004812.1 + 146718 0.67 0.978879
Target:  5'- uCGGggGGGGGggGaaaggaggaaagaaGgGAGGGg -3'
miRNA:   3'- -GCCuuCCCCCuuCaaagag--------CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 64109 0.67 0.97865
Target:  5'- gGGAgacgccgcggcagacGGGGGGGAGgacgCggaCGCGAucGGGg -3'
miRNA:   3'- gCCU---------------UCCCCCUUCaaa-Ga--GCGCU--UCC- -5'
21513 3' -52.4 NC_004812.1 + 71410 0.67 0.977713
Target:  5'- gCGGGcgcGGGGGAAGUgguggUUgUUGCGGucaAGGu -3'
miRNA:   3'- -GCCUu--CCCCCUUCA-----AAgAGCGCU---UCC- -5'
21513 3' -52.4 NC_004812.1 + 7943 0.67 0.977713
Target:  5'- gCGGccGGGGGgcGcgUC-CGgGggGGg -3'
miRNA:   3'- -GCCuuCCCCCuuCaaAGaGCgCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 38844 0.67 0.977713
Target:  5'- gCGGccGGGGGgcGcgUC-CGgGggGGg -3'
miRNA:   3'- -GCCuuCCCCCuuCaaAGaGCgCuuCC- -5'
21513 3' -52.4 NC_004812.1 + 63147 0.67 0.977474
Target:  5'- gGGGAGGGGGAGccg-C-CGCGGccuccucGGGg -3'
miRNA:   3'- gCCUUCCCCCUUcaaaGaGCGCU-------UCC- -5'
21513 3' -52.4 NC_004812.1 + 24588 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 24354 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 24432 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 24380 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 149836 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 149862 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 149914 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5'
21513 3' -52.4 NC_004812.1 + 149888 0.67 0.977233
Target:  5'- nGGAAgGGGGGAAGggaagggGgGAAGGg -3'
miRNA:   3'- gCCUU-CCCCCUUCaaagag-CgCUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.