miRNA display CGI


Results 21 - 40 of 971 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21518 3' -63.1 NC_004812.1 + 138727 0.66 0.625998
Target:  5'- gGCGGgcCCGCGGCgugCCGGcCGGuCGCc -3'
miRNA:   3'- -CGCC--GGCGCCGguaGGCCuGCU-GCGc -5'
21518 3' -63.1 NC_004812.1 + 110093 0.66 0.625998
Target:  5'- -aGGCCccGUgGGCCcccCCGGGgGGCGCGg -3'
miRNA:   3'- cgCCGG--CG-CCGGua-GGCCUgCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 46658 0.66 0.623117
Target:  5'- uGgGGuCCGUGGCCGgggggcagcuccgcUCCGauaugaggcgcGACGGCGCu -3'
miRNA:   3'- -CgCC-GGCGCCGGU--------------AGGC-----------CUGCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 100084 0.66 0.625998
Target:  5'- gGgGGCCG-GGCCG-CCGGA--GCGCc -3'
miRNA:   3'- -CgCCGGCgCCGGUaGGCCUgcUGCGc -5'
21518 3' -63.1 NC_004812.1 + 67778 0.66 0.635601
Target:  5'- gGCGGCCcggggcgcggGCGGCU--UCGGGgGGgGCGg -3'
miRNA:   3'- -CGCCGG----------CGCCGGuaGGCCUgCUgCGC- -5'
21518 3' -63.1 NC_004812.1 + 65511 0.66 0.616399
Target:  5'- aCGGCCGgcaGGCCggcgaGUCCGaGgccaaGCGGCGCa -3'
miRNA:   3'- cGCCGGCg--CCGG-----UAGGC-C-----UGCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 79171 0.66 0.616399
Target:  5'- uCGGCCgGCGGaCAggucuucgaggCUGGACGGCGgGg -3'
miRNA:   3'- cGCCGG-CGCCgGUa----------GGCCUGCUGCgC- -5'
21518 3' -63.1 NC_004812.1 + 74271 0.66 0.625998
Target:  5'- cCGGCCGCGcaCCGUCCGcGGguccggcucaUGGCGCu -3'
miRNA:   3'- cGCCGGCGCc-GGUAGGC-CU----------GCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 136301 0.66 0.616399
Target:  5'- cGCGGCCcCGGgCG-CUGGACGucaggaccgcucGCGCa -3'
miRNA:   3'- -CGCCGGcGCCgGUaGGCCUGC------------UGCGc -5'
21518 3' -63.1 NC_004812.1 + 126998 0.66 0.616399
Target:  5'- gGCGGCgGCGgagcGCCggCCGGcccGCGccgccGCGCGa -3'
miRNA:   3'- -CGCCGgCGC----CGGuaGGCC---UGC-----UGCGC- -5'
21518 3' -63.1 NC_004812.1 + 136479 0.66 0.623117
Target:  5'- cCGGCCGgGGCCcgGUCCGcucccccgcgcgccGcugcgcGCGGCGCGc -3'
miRNA:   3'- cGCCGGCgCCGG--UAGGC--------------C------UGCUGCGC- -5'
21518 3' -63.1 NC_004812.1 + 56428 0.66 0.635601
Target:  5'- uGCGGuCCGCcaGGCg--CCGGGCGAuCGUc -3'
miRNA:   3'- -CGCC-GGCG--CCGguaGGCCUGCU-GCGc -5'
21518 3' -63.1 NC_004812.1 + 1932 0.66 0.635601
Target:  5'- cCGGCCGgGGCgcuccgccCGUCgGGGgGACGgGu -3'
miRNA:   3'- cGCCGGCgCCG--------GUAGgCCUgCUGCgC- -5'
21518 3' -63.1 NC_004812.1 + 48136 0.66 0.625998
Target:  5'- aGCGG--GUGGCCGUCCucgaGGcGCGGCGCc -3'
miRNA:   3'- -CGCCggCGCCGGUAGG----CC-UGCUGCGc -5'
21518 3' -63.1 NC_004812.1 + 137044 0.66 0.635601
Target:  5'- gGUGGCCggggugGUGGCCggCCuGGGCuuCGCGa -3'
miRNA:   3'- -CGCCGG------CGCCGGuaGG-CCUGcuGCGC- -5'
21518 3' -63.1 NC_004812.1 + 69674 0.66 0.616399
Target:  5'- uGUGGCCGcCGGaCuCGUCCuGGGgGcCGCGc -3'
miRNA:   3'- -CGCCGGC-GCC-G-GUAGG-CCUgCuGCGC- -5'
21518 3' -63.1 NC_004812.1 + 7638 0.66 0.635601
Target:  5'- gGCGGCCGgGGUCGgggcgcgaagcUgCGGGCc-CGCGg -3'
miRNA:   3'- -CGCCGGCgCCGGU-----------AgGCCUGcuGCGC- -5'
21518 3' -63.1 NC_004812.1 + 4863 0.66 0.625998
Target:  5'- aGgGGCCGCGGCCcgCgCGaGAaacaaCGAgGCc -3'
miRNA:   3'- -CgCCGGCGCCGGuaG-GC-CU-----GCUgCGc -5'
21518 3' -63.1 NC_004812.1 + 57066 0.66 0.625998
Target:  5'- -gGGCCGCGGUCGgcUCCGacaccGCGuCGCc -3'
miRNA:   3'- cgCCGGCGCCGGU--AGGCc----UGCuGCGc -5'
21518 3' -63.1 NC_004812.1 + 56111 0.66 0.635601
Target:  5'- cGCGuCCaUGGUCGaCUGGugGGCGCGg -3'
miRNA:   3'- -CGCcGGcGCCGGUaGGCCugCUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.