miRNA display CGI

Results 1 - 20 of 971 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21518	3'	-63.1	NC_004812.1	+	127543	0.66	0.616399
	Target:  5'- gGCgGGCCuCGGUCGgcggCGGGgGGCGCGg -3' miRNA:   3'- -CG-CCGGcGCCGGUag--GCCUgCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	107946	0.66	0.625998
	Target:  5'- -aGGCC--GGCCAUCgCGcGGCGAgGCGc -3' miRNA:   3'- cgCCGGcgCCGGUAG-GC-CUGCUgCGC- -5'
21518	3'	-63.1	NC_004812.1	+	79171	0.66	0.616399
	Target:  5'- uCGGCCgGCGGaCAggucuucgaggCUGGACGGCGgGg -3' miRNA:   3'- cGCCGG-CGCCgGUa----------GGCCUGCUGCgC- -5'
21518	3'	-63.1	NC_004812.1	+	99715	0.66	0.616399
	Target:  5'- cGCGGCCGCGGCgUAgugCUuGAUGuacuCGCa -3' miRNA:   3'- -CGCCGGCGCCG-GUa--GGcCUGCu---GCGc -5'
21518	3'	-63.1	NC_004812.1	+	100388	0.66	0.625998
	Target:  5'- gGgGGCgCGaGGCCAccggCCGGAgguCGAUGCGc -3' miRNA:   3'- -CgCCG-GCgCCGGUa---GGCCU---GCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	152478	0.66	0.615439
	Target:  5'- gGCGGCCGCccucuccgacgagGGCCccgCCGG-CGcCGgGg -3' miRNA:   3'- -CGCCGGCG-------------CCGGua-GGCCuGCuGCgC- -5'
21518	3'	-63.1	NC_004812.1	+	136301	0.66	0.616399
	Target:  5'- cGCGGCCcCGGgCG-CUGGACGucaggaccgcucGCGCa -3' miRNA:   3'- -CGCCGGcGCCgGUaGGCCUGC------------UGCGc -5'
21518	3'	-63.1	NC_004812.1	+	46658	0.66	0.623117
	Target:  5'- uGgGGuCCGUGGCCGgggggcagcuccgcUCCGauaugaggcgcGACGGCGCu -3' miRNA:   3'- -CgCC-GGCGCCGGU--------------AGGC-----------CUGCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	84770	0.66	0.616399
	Target:  5'- uGCGGgCG-GGCCGcCCGGcCGcCGCa -3' miRNA:   3'- -CGCCgGCgCCGGUaGGCCuGCuGCGc -5'
21518	3'	-63.1	NC_004812.1	+	98421	0.66	0.615439
	Target:  5'- aGCGucucgguGCgGCGGCCG-CgGGGCGgcagGCGCGg -3' miRNA:   3'- -CGC-------CGgCGCCGGUaGgCCUGC----UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	4863	0.66	0.625998
	Target:  5'- aGgGGCCGCGGCCcgCgCGaGAaacaaCGAgGCc -3' miRNA:   3'- -CgCCGGCGCCGGuaG-GC-CU-----GCUgCGc -5'
21518	3'	-63.1	NC_004812.1	+	69674	0.66	0.616399
	Target:  5'- uGUGGCCGcCGGaCuCGUCCuGGGgGcCGCGc -3' miRNA:   3'- -CGCCGGC-GCC-G-GUAGG-CCUgCuGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	117163	0.66	0.616399
	Target:  5'- uGCGGCUauaaaucacggGCGGUCG-CCGcGGCGAC-CGg -3' miRNA:   3'- -CGCCGG-----------CGCCGGUaGGC-CUGCUGcGC- -5'
21518	3'	-63.1	NC_004812.1	+	65511	0.66	0.616399
	Target:  5'- aCGGCCGgcaGGCCggcgaGUCCGaGgccaaGCGGCGCa -3' miRNA:   3'- cGCCGGCg--CCGG-----UAGGC-C-----UGCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	144956	0.66	0.616399
	Target:  5'- gGCGGacgccccgugCGCGGCgagCGUCUGGACGgaGCGCc -3' miRNA:   3'- -CGCCg---------GCGCCG---GUAGGCCUGC--UGCGc -5'
21518	3'	-63.1	NC_004812.1	+	98501	0.66	0.616399
	Target:  5'- gGCGGCgCGgGgcGCCGggucCCGGGCGGCcccgGCGa -3' miRNA:   3'- -CGCCG-GCgC--CGGUa---GGCCUGCUG----CGC- -5'
21518	3'	-63.1	NC_004812.1	+	45069	0.66	0.616399
	Target:  5'- uCGGCCG-GGCCggcGUCCGGGggaaagccggcCGGCGgGc -3' miRNA:   3'- cGCCGGCgCCGG---UAGGCCU-----------GCUGCgC- -5'
21518	3'	-63.1	NC_004812.1	+	110093	0.66	0.625998
	Target:  5'- -aGGCCccGUgGGCCcccCCGGGgGGCGCGg -3' miRNA:   3'- cgCCGG--CG-CCGGua-GGCCUgCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	126998	0.66	0.616399
	Target:  5'- gGCGGCgGCGgagcGCCggCCGGcccGCGccgccGCGCGa -3' miRNA:   3'- -CGCCGgCGC----CGGuaGGCC---UGC-----UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	13240	0.66	0.668194
	Target:  5'- cGCGGUCGUcagcucguaccgggaGGCCuccgacGUCgGGGCGGCGg- -3' miRNA:   3'- -CGCCGGCG---------------CCGG------UAGgCCUGCUGCgc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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