miRNA display CGI

Results 1 - 20 of 971 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21518	3'	-63.1	NC_004812.1	+	48602	1.09	0.000854
	Target:  5'- cGCGGCCGCGGCCAUCCGGACGACGCGc -3' miRNA:   3'- -CGCCGGCGCCGGUAGGCCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	43571	0.9	0.018427
	Target:  5'- cCGGCCGCGGCCGUCCGucCGGCGCGc -3' miRNA:   3'- cGCCGGCGCCGGUAGGCcuGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	71053	0.86	0.036002
	Target:  5'- gGCGGCCgccccuGCGGCgGUUCGGGCGGCGCGg -3' miRNA:   3'- -CGCCGG------CGCCGgUAGGCCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	81509	0.84	0.052796
	Target:  5'- gGCGGCCGCGGCCAagacgCUGGAgcaGGCGCGc -3' miRNA:   3'- -CGCCGGCGCCGGUa----GGCCUg--CUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	2641	0.83	0.063041
	Target:  5'- cGCGGCgGCGGCgCGUCCGGGuagaGGCGCGc -3' miRNA:   3'- -CGCCGgCGCCG-GUAGGCCUg---CUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	128149	0.83	0.063041
	Target:  5'- cGCGGCgGCGGCgCGUCCGGGuagaGGCGCGc -3' miRNA:   3'- -CGCCGgCGCCG-GUAGGCCUg---CUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	94495	0.83	0.064653
	Target:  5'- cGCGGCCGgGGCCAgcgcgcgguUCUGGugGACGgGg -3' miRNA:   3'- -CGCCGGCgCCGGU---------AGGCCugCUGCgC- -5'
21518	3'	-63.1	NC_004812.1	+	117112	0.81	0.077104
	Target:  5'- -aGG-CGCGGCC-UCCGGGCGGCGCGc -3' miRNA:   3'- cgCCgGCGCCGGuAGGCCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	148013	0.81	0.077104
	Target:  5'- -aGG-CGCGGCC-UCCGGGCGGCGCGc -3' miRNA:   3'- cgCCgGCGCCGGuAGGCCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	44033	0.81	0.07906
	Target:  5'- gGCGGCCGCGcGUCAccugcgcgUCGGACGGCGCGc -3' miRNA:   3'- -CGCCGGCGC-CGGUa-------GGCCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	40052	0.81	0.07906
	Target:  5'- aGCGGCCGCcgcGGCCGcucgugcgcuuuUCCGGGCGGCGgGc -3' miRNA:   3'- -CGCCGGCG---CCGGU------------AGGCCUGCUGCgC- -5'
21518	3'	-63.1	NC_004812.1	+	113050	0.81	0.083117
	Target:  5'- aCGGCCGCGGCCGgcgucggCCGcGGCGGCaGCGa -3' miRNA:   3'- cGCCGGCGCCGGUa------GGC-CUGCUG-CGC- -5'
21518	3'	-63.1	NC_004812.1	+	88208	0.81	0.085219
	Target:  5'- gGCGaGCCGCGGCC--CCGGACGGCGg- -3' miRNA:   3'- -CGC-CGGCGCCGGuaGGCCUGCUGCgc -5'
21518	3'	-63.1	NC_004812.1	+	153124	0.8	0.091832
	Target:  5'- cGCGcCCGCGGCCcgCCGcgcuGACGGCGCGa -3' miRNA:   3'- -CGCcGGCGCCGGuaGGC----CUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	127731	0.8	0.091832
	Target:  5'- cGCGGcCCGCGGCCAgcgCaCGcGCGGCGCGg -3' miRNA:   3'- -CGCC-GGCGCCGGUa--G-GCcUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	27616	0.8	0.091832
	Target:  5'- cGCGcCCGCGGCCcgCCGcgcuGACGGCGCGa -3' miRNA:   3'- -CGCcGGCGCCGGuaGGC----CUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	39275	0.8	0.094143
	Target:  5'- gGCGGCCGCcggGGCCcgggGUCCGGG-GGCGCGg -3' miRNA:   3'- -CGCCGGCG---CCGG----UAGGCCUgCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	8374	0.8	0.094143
	Target:  5'- gGCGGCCGCcggGGCCcgggGUCCGGG-GGCGCGg -3' miRNA:   3'- -CGCCGGCG---CCGG----UAGGCCUgCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	129909	0.8	0.10066
	Target:  5'- aGCGGCCgGCGGCCAuggcguagcccaggUgCGGcACGGCGCGg -3' miRNA:   3'- -CGCCGG-CGCCGGU--------------AgGCC-UGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	4401	0.8	0.10066
	Target:  5'- aGCGGCCgGCGGCCAuggcguagcccaggUgCGGcACGGCGCGg -3' miRNA:   3'- -CGCCGG-CGCCGGU--------------AgGCC-UGCUGCGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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