miRNA display CGI

Results 1 - 20 of 971 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21518	3'	-63.1	NC_004812.1	+	128222	0.78	0.139408
	Target:  5'- cGCGGCCGgaGGCCAgcaCGGcGCGGCGCa -3' miRNA:   3'- -CGCCGGCg-CCGGUag-GCC-UGCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	108023	0.8	0.10141
	Target:  5'- cGCGGCCGCGucGCCG-CCGGugGAgGUGa -3' miRNA:   3'- -CGCCGGCGC--CGGUaGGCCugCUgCGC- -5'
21518	3'	-63.1	NC_004812.1	+	57109	0.79	0.111924
	Target:  5'- cGCGGCCGCGGUCGgccCCGaugccaugucuGugGGCGCGg -3' miRNA:   3'- -CGCCGGCGCCGGUa--GGC-----------CugCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	75111	0.78	0.123451
	Target:  5'- uUGGCCGCGGCCG-CCGGGauCGcCGCGa -3' miRNA:   3'- cGCCGGCGCCGGUaGGCCU--GCuGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	155401	0.78	0.126501
	Target:  5'- gGgGGCCG-GGCCGggCCGGGCGugGUGg -3' miRNA:   3'- -CgCCGGCgCCGGUa-GGCCUGCugCGC- -5'
21518	3'	-63.1	NC_004812.1	+	86853	0.78	0.12962
	Target:  5'- cGCGGCCGCcauGGCUcgguUCCuGGGCGACGCc -3' miRNA:   3'- -CGCCGGCG---CCGGu---AGG-CCUGCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	124466	0.78	0.12962
	Target:  5'- gGCGGCCGCGgcGCCGcCCGGGCGGggaggagccccCGCGg -3' miRNA:   3'- -CGCCGGCGC--CGGUaGGCCUGCU-----------GCGC- -5'
21518	3'	-63.1	NC_004812.1	+	18354	0.78	0.139408
	Target:  5'- cGCGaCCGCGGCCG-CCGcGGCGuACGCGg -3' miRNA:   3'- -CGCcGGCGCCGGUaGGC-CUGC-UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	109959	0.78	0.139408
	Target:  5'- gGCGGCCGUGGCgCugcuguuUCCGGGCGccCGCGu -3' miRNA:   3'- -CGCCGGCGCCG-Gu------AGGCCUGCu-GCGC- -5'
21518	3'	-63.1	NC_004812.1	+	129317	0.8	0.10141
	Target:  5'- gGCGGCCuCGGCgCcgCCGG-CGACGCGg -3' miRNA:   3'- -CGCCGGcGCCG-GuaGGCCuGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	68179	0.8	0.10141
	Target:  5'- gGCGGCCGCGGgCGggggcgcgCCGGACGcccggccgcGCGCGg -3' miRNA:   3'- -CGCCGGCGCCgGUa-------GGCCUGC---------UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	129909	0.8	0.10066
	Target:  5'- aGCGGCCgGCGGCCAuggcguagcccaggUgCGGcACGGCGCGg -3' miRNA:   3'- -CGCCGG-CGCCGGU--------------AgGCC-UGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	128149	0.83	0.063041
	Target:  5'- cGCGGCgGCGGCgCGUCCGGGuagaGGCGCGc -3' miRNA:   3'- -CGCCGgCGCCG-GUAGGCCUg---CUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	94495	0.83	0.064653
	Target:  5'- cGCGGCCGgGGCCAgcgcgcgguUCUGGugGACGgGg -3' miRNA:   3'- -CGCCGGCgCCGGU---------AGGCCugCUGCgC- -5'
21518	3'	-63.1	NC_004812.1	+	117112	0.81	0.077104
	Target:  5'- -aGG-CGCGGCC-UCCGGGCGGCGCGc -3' miRNA:   3'- cgCCgGCGCCGGuAGGCCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	44033	0.81	0.07906
	Target:  5'- gGCGGCCGCGcGUCAccugcgcgUCGGACGGCGCGc -3' miRNA:   3'- -CGCCGGCGC-CGGUa-------GGCCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	113050	0.81	0.083117
	Target:  5'- aCGGCCGCGGCCGgcgucggCCGcGGCGGCaGCGa -3' miRNA:   3'- cGCCGGCGCCGGUa------GGC-CUGCUG-CGC- -5'
21518	3'	-63.1	NC_004812.1	+	127731	0.8	0.091832
	Target:  5'- cGCGGcCCGCGGCCAgcgCaCGcGCGGCGCGg -3' miRNA:   3'- -CGCC-GGCGCCGGUa--G-GCcUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	153124	0.8	0.091832
	Target:  5'- cGCGcCCGCGGCCcgCCGcgcuGACGGCGCGa -3' miRNA:   3'- -CGCcGGCGCCGGuaGGC----CUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	8374	0.8	0.094143
	Target:  5'- gGCGGCCGCcggGGCCcgggGUCCGGG-GGCGCGg -3' miRNA:   3'- -CGCCGGCG---CCGG----UAGGCCUgCUGCGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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