miRNA display CGI

Results 1 - 20 of 971 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21518	3'	-63.1	NC_004812.1	+	46	0.71	0.369539
	Target:  5'- gGCgGGCCGCGGgCG--CGG-CGGCGCGg -3' miRNA:   3'- -CG-CCGGCGCCgGUagGCCuGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	162	0.7	0.416975
	Target:  5'- cGCGcCCGCGGCCcgCCGcGCGuuuauuuucGCGCGc -3' miRNA:   3'- -CGCcGGCGCCGGuaGGCcUGC---------UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	285	0.68	0.512756
	Target:  5'- cGCGcuCCGCcGCCGUCCGGcCGcgcccgagaGCGCGg -3' miRNA:   3'- -CGCc-GGCGcCGGUAGGCCuGC---------UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	371	0.67	0.56868
	Target:  5'- uCGGCCGCcgccGGCgCAUCCc-GCGGCGCc -3' miRNA:   3'- cGCCGGCG----CCG-GUAGGccUGCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	430	0.66	0.663413
	Target:  5'- cGCGGCgcucucgCGCGcGCCcgCCGcGAgcccgggccgcCGGCGCGc -3' miRNA:   3'- -CGCCG-------GCGC-CGGuaGGC-CU-----------GCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	511	0.71	0.369539
	Target:  5'- gGCcGCCGCGGCCGgggCGGGCccGCGCGc -3' miRNA:   3'- -CGcCGGCGCCGGUag-GCCUGc-UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	571	0.71	0.354569
	Target:  5'- cGCGGCCGCGuggaGCCGcgggcgcggcUCCGGua-GCGCGg -3' miRNA:   3'- -CGCCGGCGC----CGGU----------AGGCCugcUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	583	0.68	0.531175
	Target:  5'- cGCGG-CGCGGCCcccggccCCGGGCGuccccucccccGCGCc -3' miRNA:   3'- -CGCCgGCGCCGGua-----GGCCUGC-----------UGCGc -5'
21518	3'	-63.1	NC_004812.1	+	692	0.73	0.280033
	Target:  5'- cGCGGCC-CGGCC-UCCu--CGGCGCGg -3' miRNA:   3'- -CGCCGGcGCCGGuAGGccuGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	731	0.72	0.325932
	Target:  5'- cGCGGUCGcCGGCgGggguggGGGCGGCGCGa -3' miRNA:   3'- -CGCCGGC-GCCGgUagg---CCUGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	866	0.69	0.459224
	Target:  5'- cGCGGCCGCGaGCCccgcCCGcGCG-CGCc -3' miRNA:   3'- -CGCCGGCGC-CGGua--GGCcUGCuGCGc -5'
21518	3'	-63.1	NC_004812.1	+	1086	0.67	0.549829
	Target:  5'- cCGGCCGCGGUCuccuccugcCCGG-CGGCcCGg -3' miRNA:   3'- cGCCGGCGCCGGua-------GGCCuGCUGcGC- -5'
21518	3'	-63.1	NC_004812.1	+	1136	0.75	0.208638
	Target:  5'- cCGGCCGCcaGGCUccCCGG-CGGCGCGa -3' miRNA:   3'- cGCCGGCG--CCGGuaGGCCuGCUGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	1220	0.73	0.286262
	Target:  5'- gGCGgcGCCGCGGgggcuccuccCCGcCCGGGCGGCGCc -3' miRNA:   3'- -CGC--CGGCGCC----------GGUaGGCCUGCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	1258	0.7	0.392792
	Target:  5'- cGCGGCCGCccguuGGUCcgCCGGccGCGG-GCGg -3' miRNA:   3'- -CGCCGGCG-----CCGGuaGGCC--UGCUgCGC- -5'
21518	3'	-63.1	NC_004812.1	+	1313	0.73	0.280033
	Target:  5'- gGCGGuCCGCgGGCgGUCCgcGGGCGGucCGCGg -3' miRNA:   3'- -CGCC-GGCG-CCGgUAGG--CCUGCU--GCGC- -5'
21518	3'	-63.1	NC_004812.1	+	1407	0.7	0.433593
	Target:  5'- cGCGGCC-CGGCC--CCGacGGCGGcCGCGg -3' miRNA:   3'- -CGCCGGcGCCGGuaGGC--CUGCU-GCGC- -5'
21518	3'	-63.1	NC_004812.1	+	1437	0.72	0.325932
	Target:  5'- aGgGGCCGgGGCCGcgagggCCGGgcacggcgGCGACGCc -3' miRNA:   3'- -CgCCGGCgCCGGUa-----GGCC--------UGCUGCGc -5'
21518	3'	-63.1	NC_004812.1	+	1490	0.66	0.616399
	Target:  5'- gGCGGCgGCGgagcGCCggCCGGcccGCGccgccGCGCGa -3' miRNA:   3'- -CGCCGgCGC----CGGuaGGCC---UGC-----UGCGC- -5'
21518	3'	-63.1	NC_004812.1	+	1674	0.7	0.416975
	Target:  5'- cGCGgcGCCGCGGCCcgCCc-GCGGCGgGg -3' miRNA:   3'- -CGC--CGGCGCCGGuaGGccUGCUGCgC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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